Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00476 ATGGACGTGGAGTCCTCCCGTTCGCCTCGGGCGGTTGAGAAAGATGGCGGTAACAAGGAGGAAGAGAAGCACGGGAGTGACGAGAAGGACGACACCGACATGCCGTCGTCGTTGAACCTTAGAGAGCTTTCTAAGGTTATACTTCCACCTTTAGGAGTGTCGAGCTTCACTGATGGAAGTAAATTTAAGGGTAATAAATGGATCGTCTCTCCCATGAGCTCAAGATACAGGTGGTGGCAGTCGTTCATGGTGGTTTTGGTTGCTTACTCGGTGTGGGTTTATCCATTGGAAGTGGCGTTCAAGGACGCAATTCCGAAGCGGGAATTATTAATTGCAGACAATGTTGTCGATCTATTCTTCGCCTTCGATATCTTCCTTACCTTCTTCGTTGCTTACATTGATCATCGGACTCAGCTTCTTGTTCGTGATTCTAAGAAGATAGCTATCAGGTACTTGTCAACATGGTTCTTGATGGATTTGGCATCAACAATCCCATTTGAGACAATTGGATACCTTTTTGTTAGCAACTATAATGGTGGTCTCCCTTATGCCCTCCTGGGATTGCTCAAGTTTTGGCGACTACGACGTGTCAAGCAATTTTTCACAAGGCTAGAGAAGGACATTAGATTCAGCTACTTTTTGGTTCGATGTGCTAGGCTTCTATCTACCTGGATAGGAACCATGAATCCAAATTTTAAAGAGATTAGCTTTGGAGTGAGATATATTTCAGCCTTGTATTGGTCTATCACCACCATGACGACTGTTGGTTATGGTGATCTTCATGCTGTGAACATTGTAGAGATGATCTTCATCATTTTCTACATGCTCTTCAATCTTGGCTTAACCGCTTACTTGATCGGTAACATGACGAACTTAGTCGTCGAAGGAACTCGTCGCACAATGGAATTTAGAAACAACATCGAAATGGCGTCAAACTTTGTTAACCGAAATCGGCTGCCTTCGAGATTGAAGGAACAGATATTAGCATATATGTGTTTGAGATTCAAGGCAGAGAGCCTAAACCAACAACAGCTGATTGATCAGCTTCCAAAGTCGATATGTAAAAACATATGTCAGCAATTGTTTTTGCCAACAGTGGAGAAAGTCTACCTCTTCAAGGGTGTCTCAAAGGAAACACTTGCATTGCTGGTAGCAAAGATGAAAGCTGAGTATATACCTCCGAAGGAGGACGTGATTATACATAACGAAACCCCCGACGAAGTTTATATCATCGTGTCCGGGGAAATCGAAATTATCGACTGTGAGATGGAGCGGGAGCGGATTGTTGGGACACTACAGTGTGGCAGTATGTTTGGGGAAGTTGGAGCACTTTGTTGCAAAAACCAAAATCTTACATACAGAACCAAAACTCTTTCACAGCTCTTGAGGCTTAAAACAAGTATACTACAAGAAGCTATGCATGTCAGGCAAGACGACAGTATGGTCATTGTCAAGAACTTCCATCAGGAAAGGCAGGCCAGCCACAGAATCACCATAGAAGGTTCAGTTGAAAAAGAAACGCCAGCGTTCAATGAAGAAAAGGATCAAAGTTTCAATTGGAAACACTCCATTGAATTAGACTTTGCTAGAGTAAATGTATACAAAGGCCATCCAGTAGCCAGAAAACAGGCTTCTTGTGAAGATCCTGGAAAGCTCATCAAATTGCCACATTCAATGGAGGAGCTCAAAAGAGTTGCAGGTGAAAAGCTTGGATTTGATGCAAGAAATGCTGTTTTGACAAATGAAGAAGGCTCTGAAATTGACTCCATTGATGTGGTAAGGGATAATGATAAGCTTTTCTTTTCATAG 1809 42.62 MDVESSRSPRAVEKDGGNKEEEKHGSDEKDDTDMPSSLNLRELSKVILPPLGVSSFTDGSKFKGNKWIVSPMSSRYRWWQSFMVVLVAYSVWVYPLEVAFKDAIPKRELLIADNVVDLFFAFDIFLTFFVAYIDHRTQLLVRDSKKIAIRYLSTWFLMDLASTIPFETIGYLFVSNYNGGLPYALLGLLKFWRLRRVKQFFTRLEKDIRFSYFLVRCARLLSTWIGTMNPNFKEISFGVRYISALYWSITTMTTVGYGDLHAVNIVEMIFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNNIEMASNFVNRNRLPSRLKEQILAYMCLRFKAESLNQQQLIDQLPKSICKNICQQLFLPTVEKVYLFKGVSKETLALLVAKMKAEYIPPKEDVIIHNETPDEVYIIVSGEIEIIDCEMERERIVGTLQCGSMFGEVGALCCKNQNLTYRTKTLSQLLRLKTSILQEAMHVRQDDSMVIVKNFHQERQASHRITIEGSVEKETPAFNEEKDQSFNWKHSIELDFARVNVYKGHPVARKQASCEDPGKLIKLPHSMEELKRVAGEKLGFDARNAVLTNEEGSEIDSIDVVRDNDKLFFS 602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2744790 2750563 + Cp4.1LG01g01900.1 Cpe01g00476 461789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00476 602 Pfam KHA, dimerisation domain of potassium ion channel 530 601 IPR021789 -
Cpe01g00476 602 ProSiteProfiles KHA domain profile. 530 602 IPR021789 -
Cpe01g00476 602 Pfam Ion channel 228 293 IPR013099 -
Cpe01g00476 602 Gene3D Helix hairpin bin 298 361 - -
Cpe01g00476 602 PANTHER POTASSIUM CHANNEL AKT1 527 601 IPR045319 GO:0005249|GO:0006813
Cpe01g00476 602 PANTHER POTASSIUM CHANNEL AKT1 42 500 IPR045319 GO:0005249|GO:0006813
Cpe01g00476 602 Gene3D - 78 294 - -
Cpe01g00476 602 PANTHER POTASSIUM CHANNEL AKT2/3 527 601 - -
Cpe01g00476 602 MobiDBLite consensus disorder prediction 1 36 - -
Cpe01g00476 602 CDD CAP_ED 371 474 IPR000595 -
Cpe01g00476 602 Pfam Cyclic nucleotide-binding domain 395 473 IPR000595 -
Cpe01g00476 602 SUPERFAMILY cAMP-binding domain-like 298 489 IPR018490 -
Cpe01g00476 602 SUPERFAMILY Voltage-gated potassium channels 71 294 - -
Cpe01g00476 602 SMART cnmp_10 371 488 IPR000595 -
Cpe01g00476 602 ProSiteProfiles cAMP/cGMP binding motif profile. 371 490 IPR000595 -
Cpe01g00476 602 PANTHER POTASSIUM CHANNEL AKT2/3 42 500 - -
Cpe01g00476 602 Pfam Ion transport protein 76 222 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cpe01g00476 602 Gene3D Jelly Rolls 365 500 IPR014710 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00476 Cpe14g00320 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00476 Cpe-Chr1:2744790 Cpe02g00423 Cpe-Chr2:2340360 9.81E-153 dispersed
Cpe01g00476 Cpe-Chr1:2744790 Cpe14g00320 Cpe-Chr14:1896169 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00476 K21867 - csv:101205212 997.653