Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00483 ATGGCTTCTCGTTTCTGGTCCCAGGGTGGTGGTAGTGGTAGTGATTCTGAAGCGGAGAAGAGTGACTATGATGAAGAGATTGACGACCTACAAGCTGATCCTAGCTCCCAAGCGAATAGAAGCAGATATCTGCAAGGGAATGCCAGTGACAGTGACGATTCTGATAAAGATAGACGTACTGTCAGGTCGGCTAAAGATAAGCGTTTTGAGGAGATGTCTGCTTCTGTGGATCAGATGAAAAATGCAATGAAGATCAATGACTGGGTAAGCTTGCAGGAGAGTTTTGATAAAATAAATAAGCAGCTTGAGAAGGTCATGCGTGTTATGGAGTCTGAGAAGTTGAGCAAACGGGATAAGCTCATGGATAAGCAGTTTATGAAGGATCCGAGAGAGATCACATGGGACACTGTTAACAAGAAATTTAAGGAGGTTGTGGCTGCCCGGGGTAGGAAGGGAACTGGAAGATTTGAGCAGGTTGAGCAGCTTACGTTCTTAACAAGAGTTGCTAAGACCCCTGCACAGAAGCTTGAGATTTTGTTCAGTGTTATATCTGCTCAATTTGATGTTAATCCAGGTCTCAGTGGGCACATGCCTATCAGTGTGTGGAAGAAGTGTGTGCAAAATATGCTTTCTATTATTGACATTCTTATGCAGAATTCTAACATTGTGGTGGATGATATGGTTGAACCTGATGAGAACGAGAGCCAGAAGCCAGCAGACTATGAGGGCACAATTCGTGTGTGGGGAAACTTGGTTGCTTTTGTTGAGAGGATTGACACTGAGTTTTTTAAGAGCTTGCAGTGTATTGATCCACATACACGTGAGTATGTTGAAAGACTCAGAGATGAGCCAATGTTTATGGTTCTTGCTCAGAATGTCCAAGAATATTTGGAACGAACTGGGGATTACAAAGCAGCTTCAAAAGTTGCCTTGAGACGTGTCGAGCTGATCTATTACAAACCACAAGAGGTTTATGATGCCATGATAAAGCTCGCAGAGCTGTCCGAAGATGGAGCTAGTGGAGATGCTAGTGAGGAGGCTAAGGTTGCAGAAGAGATTAGGGGCCCTGCTGCATTTATTGTCACGCCGGAGGTTGTACCTCGTGTACCCACCTTTCCAGAGAGTAGTAGAGCTTTTATGGACATTCTGGTGACCCTTATATACCAATATGGAGACGAGCGCACTAAAGCACGAGCTATGCTCTGTGATATTTACCACCATGCGCTCTTTGATGAATTTTATATTTCTAGTGACTTGTTACTGATGAGTCACTTACAGGATAGTATTCAACACTTGGACATTTCAACACAGATCCTTTTCAATAGGGCAATGGCTCAACTTGGTCTATGTGGATTTCGGGTTGGCCTGATTAGTGAAGCACATGGCTGCCTTTCAGAATTATATTCTGGTGGGAGGGTGAGGGAATTGCTTGCACAAGGTGTCTCACAAAGCCGATATTATGAAAAGACTCCAGAGCAGGAAAGGCTTGAAAGGAGGAGGCAGATGCCATACCATATGCACATAAATCTTGAGCTCCTGGAGGCTGTGCATTTGATATGTGCTATGCTGCTGGAAGTACCCAACCTGGCAGGCAGTGTTCATGATGCAAAGCGCAAGGTTATTAGCAAGAACTTTAGAAGGTTACTGGAGGTGAGTGAGAGACAAACGTTCACTGGTCCTCCCGAGAATGTCAGAGATCATGTAATGGCTGCTACCAGAGCCCTTCGCAAGGGCGATTTCCAAAAAGCTTTTGATGTCATTGCATCTCTAGATGTATGGAAGCTACTTAGAAATCGTGATCATGTGCTGGAAATGGTTAAAGTAAAGATCAAGGTGGAAGCTCTGAGGACGTACCTTCTCACGTACTCTTCCTCATATGATTCTCTGAGTTTGGACCAGCTGACTCGAATGTTCGACATCGCAGAGGGTCAAACACACAGTATTGTTAGCAAGATGATGATAAATGAGGAGCTCCATGCAAGTTGGGATCAGCCAAGTGGATGTGTCATCTTCCATGATGTTGCGCTCACCCGGTTACAGGGCTTGGCGTTCCAGTTGGCAGATAAGCTGTCTATCCTTGCTGAAACTAATGAGAGGGCAGTGGAGGCAAGAATAGGAGGAGTAGATTTACCGATGAGGCGAAGAGACAACCAAGAGTATGCTGCCGGAGCTGTAGGTGGTGGTAGCAGGTGGCCAGACAATCAAGGAAGGCAAGGTGGCGGTAGTTCGCGTGCAGGGTATAGCAATGGAGGGCGTGGCGAAGGTGGGGGTGGCGGTAGTTCGCGTGCAGGGTATAGCAATGGAGGGCGTGGCGAAGGTGGGGGTGGCGGATATGGTAGAGACCGGACGGGTCAGTCACGAGGAGGCAATGCAGGAGGATATCAAAGCACCCGTTATCAAGACGCTGCATATAGATCGGGGAGGAGCGCTTATCAGTCTGGTTCTGTCCGAGGATCCCAGATGGGTGCTTCAGCTCGCATGGTCAGTCTCAACAAAGGGGTTATTGCTTAA 2511 46.63 MASRFWSQGGGSGSDSEAEKSDYDEEIDDLQADPSSQANRSRYLQGNASDSDDSDKDRRTVRSAKDKRFEEMSASVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVMESEKLSKRDKLMDKQFMKDPREITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTRVAKTPAQKLEILFSVISAQFDVNPGLSGHMPISVWKKCVQNMLSIIDILMQNSNIVVDDMVEPDENESQKPADYEGTIRVWGNLVAFVERIDTEFFKSLQCIDPHTREYVERLRDEPMFMVLAQNVQEYLERTGDYKAASKVALRRVELIYYKPQEVYDAMIKLAELSEDGASGDASEEAKVAEEIRGPAAFIVTPEVVPRVPTFPESSRAFMDILVTLIYQYGDERTKARAMLCDIYHHALFDEFYISSDLLLMSHLQDSIQHLDISTQILFNRAMAQLGLCGFRVGLISEAHGCLSELYSGGRVRELLAQGVSQSRYYEKTPEQERLERRRQMPYHMHINLELLEAVHLICAMLLEVPNLAGSVHDAKRKVISKNFRRLLEVSERQTFTGPPENVRDHVMAATRALRKGDFQKAFDVIASLDVWKLLRNRDHVLEMVKVKIKVEALRTYLLTYSSSYDSLSLDQLTRMFDIAEGQTHSIVSKMMINEELHASWDQPSGCVIFHDVALTRLQGLAFQLADKLSILAETNERAVEARIGGVDLPMRRRDNQEYAAGAVGGGSRWPDNQGRQGGGSSRAGYSNGGRGEGGGGGSSRAGYSNGGRGEGGGGGYGRDRTGQSRGGNAGGYQSTRYQDAAYRSGRSAYQSGSVRGSQMGASARMVSLNKGVIA 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2788683 2793329 + Cp4.1LG01g01890.1 Cpe01g00483 461796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00483 836 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 746 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe01g00483 836 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 605 693 - -
Cpe01g00483 836 MobiDBLite consensus disorder prediction 32 48 - -
Cpe01g00483 836 MobiDBLite consensus disorder prediction 1 15 - -
Cpe01g00483 836 MobiDBLite consensus disorder prediction 1 74 - -
Cpe01g00483 836 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 112 - -
Cpe01g00483 836 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 114 834 - -
Cpe01g00483 836 ProSiteProfiles PCI domain profile. 504 676 IPR000717 -
Cpe01g00483 836 SUPERFAMILY Winged helix DNA-binding domain 613 674 IPR036390 -
Cpe01g00483 836 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 110 536 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe01g00483 836 MobiDBLite consensus disorder prediction 49 74 - -
Cpe01g00483 836 Pfam PCI domain 544 672 IPR000717 -
Cpe01g00483 836 MobiDBLite consensus disorder prediction 722 797 - -
Cpe01g00483 836 SMART PINT_4 605 693 IPR000717 -
Cpe01g00483 836 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 112 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Cpe01g00483 836 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 114 834 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00483 Cpe-Chr1:2788683 Cpe14g00325 Cpe-Chr14:1943502 2.37E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00483 K03252 - csv:101203990 1200.27