Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00485 ATGGGCAAAGGGCCATTTTCTTTTCGCCGGAGTAATAGTCGTCGCCGCCCTAAGAAGGCAGCTCAGTCGACACCGTTGTTATCGCCTCAGACACCTCTGCCGATTGACGCCAGTTCTCCTCCCATTAACAATAATGGCAGCAGCTTGGTCGGTGGTGGCGGTGGTGGTGGTGGGGCTGTGGGAAAGGTGAAGAAGAAGGCTGGAGGAGCGAAGCTGTGGATGCGTCTCGACAGATGGGGGCAGTCGGAGCTTTTAGAGTGGGACAAGAGCGCAATAATCCGGCGTGCTGCAATTCCGGCTCGGGATTTGAGGATTCTTGGTCCTGTTTTCTCCCACTCCTCCAACATACTCGCAAGGGAAAAGGCCATGGTTGTTAATCTAGAGTTCATAAAAGCTATAGTTACTGCTGAAGAAGTCCTACTATTTGACCCTCTTCGCCAAGAGGTTATTCCATTTGTGGATCAGCTAAGGAAACTACTTGCTACGAAGAGTTCATCTCAGGGCCATGGAGATGGAACTGTGGATGAACGTGAAAATGATGTGAATGTTTCAAGTGGAGGAAAGTGGTTGCCAGTCTCCGAAGCTGCTGAAGGTGTGCAGTATGAGCTCCCGTTTGAGTTTCAGGTTCTGGAAAATGCGTTGGAGGTTGTATGTATGTATTTAGATTCCAGTGTGGAAGACCTTGAGAGAGATGCTTATCCAGTCCTTGATGAACTGGCTAGGAATGTCAGCACCAAGAATTTAGAACGTGTGAGGAGCTTGAAAAGTAATCTTACCCGTATTCTTGCACGCGTTCAAAAGGTGCGGGACGAGATAGAGCATCTATTAGATGACAATGAAGATATGGCACAACTATATTTGACAAGGAAATGGATGCAGAATCAACAGGCTGATGCTTTGCTGGGAGGTCTGGCTTCCAACAGCACCACAGCCATTGTTCCCCATCTTCGTCGACTTAGTTCCACCCGGAGCGGAAGTATGGTGACCAGCAATCTTCTTGATGATAATGATGTAGAGGATCTGGAAATGTTACTCGAGGCATATTTTATGCAGTTAGATGGGACTCGTAACAGGATATTATCGGTTAGGGAATACATCGATGACACCGAGGATTATGTCAATATTCAACTTGACAACCAACGAAATGAACTCATTCAGTTTCAGTTGACACTGACCATTGCTTCATTTGCCATAGCCATTGAAACCTTAATCGCCGGGTTGTTTGGCATGAACATCCATTGTACATTGTACGATCAGGAGGGGATATTCGAGTACTTCGTCGGAGGTACTTCAGTAGGTTGTTTGTTGATTTTCGTGCTTATTTTCGGGTATGCTAAATGGAAGAAGCTTCTTGGTTCATGA 1362 46.55 MGKGPFSFRRSNSRRRPKKAAQSTPLLSPQTPLPIDASSPPINNNGSSLVGGGGGGGGAVGKVKKKAGGAKLWMRLDRWGQSELLEWDKSAIIRRAAIPARDLRILGPVFSHSSNILAREKAMVVNLEFIKAIVTAEEVLLFDPLRQEVIPFVDQLRKLLATKSSSQGHGDGTVDERENDVNVSSGGKWLPVSEAAEGVQYELPFEFQVLENALEVVCMYLDSSVEDLERDAYPVLDELARNVSTKNLERVRSLKSNLTRILARVQKVRDEIEHLLDDNEDMAQLYLTRKWMQNQQADALLGGLASNSTTAIVPHLRRLSSTRSGSMVTSNLLDDNDVEDLEMLLEAYFMQLDGTRNRILSVREYIDDTEDYVNIQLDNQRNELIQFQLTLTIASFAIAIETLIAGLFGMNIHCTLYDQEGIFEYFVGGTSVGCLLIFVLIFGYAKWKKLLGS 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2800338 2805646 + Cp4.1LG01g01730.1 Cpe01g00485 461798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00485 453 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 389 440 IPR045863 -
Cpe01g00485 453 MobiDBLite consensus disorder prediction 1 62 - -
Cpe01g00485 453 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 5 453 IPR039204 -
Cpe01g00485 453 Pfam CorA-like Mg2+ transporter protein 339 444 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cpe01g00485 453 Gene3D Magnesium transport protein CorA, transmembrane region 391 451 - -
Cpe01g00485 453 Gene3D - 61 144 - -
Cpe01g00485 453 PANTHER MAGNESIUM TRANSPORTER MRS2-4-RELATED 5 453 - -
Cpe01g00485 453 MobiDBLite consensus disorder prediction 23 50 - -
Cpe01g00485 453 Coils Coil 251 285 - -
Cpe01g00485 453 Gene3D Magnesium transport protein CorA, transmembrane region 150 384 - -
Cpe01g00485 453 CDD Mrs2_Mfm1p-like 73 450 IPR039204 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00485 K16075 MRS2, MFM1; magnesium transporter - csv:101203496 705.671
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00485 Cpe-Chr1:2800338 Cpe12g00161 Cpe-Chr12:1043975 2.70E-109 dispersed
Cpe01g00485 Cpe-Chr1:2800338 Cpe14g00327 Cpe-Chr14:1953465 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe03g00907 CST 1 447 MRS2 Gene Family AT1G16010 84.1 3.4e-205 711.4
Cpe02g01612 CST 1 448 MRS2 Gene Family AT1G16010 83.3 2.4e-203 705.3
Cpe07g00089 . 8 381 MRS2 Gene Family AT1G16010 53.7 3.8e-111 399.1
Cpe12g00161 CST 1 366 MRS2 Gene Family AT5G64560 79.3 8.6e-157 550.4
Cpe17g00172 CST 1 423 MRS2 Gene Family AT5G64560 62.4 1.3e-133 473.4
Cpe15g00049 . 1 374 MRS2 Gene Family AT5G64560 68.1 9.9e-129 457.2
Cpe04g00333 . 39 498 MRS2 Gene Family AT3G19640 64.4 1.0e-149 527.3
Cpe01g00485 . 1 453 MRS2 Gene Family AT3G58970 63.1 2.3e-145 512.7
Cpe14g00327 . 1 441 MRS2 Gene Family AT3G58970 63.9 5.0e-140 495.0
Cpe07g00089 . 9 381 MRS2 Gene Family AT2G03620 66.6 9.7e-133 470.7
Cpe03g00907 CST 13 447 MRS2 Gene Family AT2G03620 53.7 2.2e-113 406.4
Cpe02g01612 CST 13 448 MRS2 Gene Family AT2G03620 52.9 2.9e-113 406.0
Cpe14g00327 . 56 440 MRS2 Gene Family AT4G28580 50.4 2.6e-90 329.7
Cpe01g00485 . 61 452 MRS2 Gene Family AT4G28580 50.1 4.4e-90 328.9
Cpe12g00161 CST 1 328 MRS2 Gene Family AT5G09690 74.9 1.3e-126 449.9
Cpe15g00049 . 1 336 MRS2 Gene Family AT5G09690 64.6 1.1e-107 387.1
Cpe17g00172 CST 1 385 MRS2 Gene Family AT5G09690 60.4 1.5e-106 383.3
Cpe03g00907 CST 40 383 MRS2 Gene Family AT5G09690 50.9 6.8e-78 288.1
Cpe12g00161 CST 23 288 MRS2 Gene Family AT5G09720 66.8 4.3e-87 318.5
Cpe17g00172 CST 23 255 MRS2 Gene Family AT5G09720 63.6 4.0e-77 285.4
Cpe15g00049 . 38 296 MRS2 Gene Family AT5G09720 61.3 6.4e-75 278.1
Cpe03g00907 CST 1 447 MRS2 Gene Family AT1G80900 82.6 7.4e-200 693.7
Cpe02g01612 CST 1 448 MRS2 Gene Family AT1G80900 81.9 4.1e-198 688.0
Cpe07g00089 . 5 381 MRS2 Gene Family AT1G80900 54.4 2.1e-109 393.3
Cpe07g00680 . 114 481 MRS2 Gene Family AT5G22830 75.5 6.8e-148 521.2
Cpe20g00717 . 114 458 MRS2 Gene Family AT5G22830 69.3 1.3e-122 437.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003636 0 2 1 1 1 2 2 2 2 1 2 1 2 1 1 2 2 2 2 1 1 1 2 2 1 1 1 5 2 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00485 Cpe_Chr01 FPKM 50.577175 50.504677 52.659607 53.29237 65.488441 71.229446 70.144257 83.909912 86.026543 94.240822