Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00492 ATGGGTTGCGTTTGTTGTAAGCCCTCTGCTATAGAGGATAGCAAGGAAAGTCCGAGGGAGAGGCTGTCGAACAAGACCGCGTCCGACCTGCAGGTGGCAAGAGTGACTTCGTCATCGAGGGAAGAAGCTTATCGATCTAAAGATCATCATGATGGTAATGATGTAAGAGTGACATTGATTAACAAGCAGGTGAATGGGTCGGGTCGATTGCAGAGTGAGATTTTTGAGAGGAAGAGGGAGAAGATGGAGCATATGGCTGCTCAACATCCTTCAATGGGGAGAATTCCGAAGGCAGCAGAGGGAGACCAAATTGCTGCAGGCTGGCCGCCGTGGCTGGCTGCAGTTGCTGGAGAGGCAATCAGAGGGTGGCTACCCCGACGAGCTGATTCTTTTGAGAAATTGGATAAAATTGGTCAAGGGACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTCGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGGCTCGATCATCCAAATGTGATAAAGCTGGAGGGTCTAGTTACGTCAAGGATGTCTTGCAGCCTCTATCTTGTATTTGAGTACATGGAACACGACTTGGCAGGACTTGCTTCACACCCTGGTGTGAAGTTTACAGAGGCACAGGTTAAATGTTACATGCAACAACTTTTGCGTGGACTTGATCATTGTCACAGTCACGGAGTTCTGCATCGTGATATAAAGGGTTCCAACCTTTTAATCGACAATAATGGCGTCTTGAAAATTGCAGACTTTGGTTTAGCAAGTTTTTTTGATATCCACCAAAATCAGCCGCTGACAAGTCGGGTTGTAACTCTTTGGTATAGACCGCCTGAGCTTTTACTCGGTGCTACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGATTGGTCAAGGGACTTATAGTAATGTATATAGGGCTCGTGACCTTGACCAAAAGAAAATTGTTGCTTTGAAGAAAGTAAGGTTCGACAACCTGGAACCTGAGAGCGTCCGCTTTATGGCTAGGGAAATTCACATATTGCGTAGGCTCGATCATCCAAATGTGATAAAGCTGGAGGGTCTAGTTACGTCAAGGATGTCTTGCAGCCTCTATCTTGTATTTGAGTACATGGAACACGACTTGGCAGGACTTGCTTCACACCCTGGTGTGAAGTTTACAGAGGCACAGGTTAAATGTTACATGCAACAACTTTTGCGTGGACTTGATCATTGTCACAGTCACGGAGTTCTGCATCGTGATATAAAGGGTTCCAACCTTTTAATCGACAATAATGGCGTCTTGAAAATTGCAGACTTTGGTTTAGCAAGTTTTTTTGATATCCACCAAAATCAGCCGCTGACAAGTCGGGTTGTAACTCTTTGGTATAGACCGCCTGAGCTTTTACTCGGTGCTACTTATTACGGTACAGCTGTAGATTTGTGGAGTACTGGCTGCATACTTGCTGAATTGTATGCTGGGAAGCCCATTATGCCAGGAAGAACAGAGGTGGAGCAGCTACATAAAATATTTAAACTCTGTGGCTCTCCTTCAGAGGATTATTGGAGAAAATCAAGGCTGCCACATGCAACGATATTTAAGCCCCAACAGCCCTATAGACGCTGCGTTGCTGACACATTTAAGGATTTCCCTGCACCAGCTTTAGCTCTCATTGAGATGTTACTCTCTATAGATCCTGCTGATCGTGGCTCTGCCGCTCTTGCCCTTAAAAGCGAATACCCTCCGAGCAAAGAATTTGATGCCAAGATAAGGGATGAGGAAGCTAGAAGACAAGGAGCGGTAGGAAGCAAGGGACACCGACATGACCTGCAAAGGAAAGATAGAGAGTCTCGAGCTGTCCCTGCACCTGACGCCAATGCCGAGTTAGTCTCATCAATGCAGAAAAGACAATCCAATTCAAAGAGCCGGAGTGAAAAGTTTAATCCACATCCAGAAGAAGCTTCTGGCTTTCCAATTGATCCACCTCGACCATCACAAGGAGCAGAACGAACGGATTCTCAGGTGCGTCATCCTAAGAAAGCCTCACATTCAGGACCACTTGCTCAGCGGGCCGCTTGGGTAAAGGCTAGTAAGAACCCAGATGACGCTCCGAAAATCTCAACCGGGGCCGATACGTTCACAACTTCAGGACTAGTAGCACCTAGAAGAAGTATGCTGGGGGAAAAGTCTGACGCTTCACAAGGAGAGGTTAAAAAACTAATTGGCAGGTTTCCTGGTTCCTTCAAGGAAACCTCGGAATCCTCGATGCTACCCGACCAGAAGTTCTCAAATCACAGTATTGTAGGCTCACACGACAAAGAGCGGTGCAGCACCAAAGACCCTATAGTTGTGGGTTATGGCTCAAAGGGTCATAAGATTCATTACTCTGGTCCATTACTGGTTCCTTCTGGCAACATGGACCAAATGTTGAAGGACCACGATCGCCATATCCAAGAAGCAGTAAGACGAGCTCGGCTCGACAAGGCCAAGGCACGAAAGGTTCAAGTTGACGGGAAACAGATGTCGACAAATTCATTATTCGTCTCCGGTCGTTAA 2661 46.26 MGCVCCKPSAIEDSKESPRERLSNKTASDLQVARVTSSSREEAYRSKDHHDGNDVRVTLINKQVNGSGRLQSEIFERKREKMEHMAAQHPSMGRIPKAAEGDQIAAGWPPWLAAVAGEAIRGWLPRRADSFEKLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGVKFTEAQVKCYMQQLLRGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLASFFDIHQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSRLPHATIFKPQQPYRRCVADTFKDFPAPALALIEMLLSIDPADRGSAALALKSEYPPSKEFDAKIRDEEARRQGAVGSKGHRHDLQRKDRESRAVPAPDANAELVSSMQKRQSNSKSRSEKFNPHPEEASGFPIDPPRPSQGAERTDSQVRHPKKASHSGPLAQRAAWVKASKNPDDAPKISTGADTFTTSGLVAPRRSMLGEKSDASQGEVKKLIGRFPGSFKETSESSMLPDQKFSNHSIVGSHDKERCSTKDPIVVGYGSKGHKIHYSGPLLVPSGNMDQMLKDHDRHIQEAVRRARLDKAKARKVQVDGKQMSTNSLFVSGR 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2843378 2849790 + Cp4.1LG01g01780.1 Cpe01g00492 461805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00492 886 SMART serkin_6 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00492 886 SMART serkin_6 131 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00492 886 MobiDBLite consensus disorder prediction 11 52 - -
Cpe01g00492 886 ProSiteProfiles Protein kinase domain profile. 131 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00492 886 SUPERFAMILY Protein kinase-like (PK-like) 125 337 IPR011009 -
Cpe01g00492 886 ProSitePatterns Protein kinases ATP-binding region signature. 338 361 IPR017441 GO:0005524
Cpe01g00492 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 452 464 IPR008271 GO:0004672|GO:0006468
Cpe01g00492 886 MobiDBLite consensus disorder prediction 630 745 - -
Cpe01g00492 886 Gene3D Transferase(Phosphotransferase) domain 1 212 336 - -
Cpe01g00492 886 Pfam Protein kinase domain 131 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00492 886 Pfam Protein kinase domain 336 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00492 886 PANTHER CELL DIVISION PROTEIN KINASE 1 340 - -
Cpe01g00492 886 Gene3D Phosphorylase Kinase; domain 1 337 414 - -
Cpe01g00492 886 PANTHER CYCLIN-DEPENDENT KINASE 338 868 - -
Cpe01g00492 886 PANTHER CYCLIN-DEPENDENT KINASE 1 340 - -
Cpe01g00492 886 CDD STKc_CDK9_like 337 615 - -
Cpe01g00492 886 SUPERFAMILY Protein kinase-like (PK-like) 337 615 IPR011009 -
Cpe01g00492 886 Gene3D Phosphorylase Kinase; domain 1 131 211 - -
Cpe01g00492 886 PANTHER CELL DIVISION PROTEIN KINASE 338 868 - -
Cpe01g00492 886 MobiDBLite consensus disorder prediction 24 39 - -
Cpe01g00492 886 ProSiteProfiles Protein kinase domain profile. 332 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00492 886 Gene3D Transferase(Phosphotransferase) domain 1 415 650 - -
Cpe01g00492 886 MobiDBLite consensus disorder prediction 630 656 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00492 Cpe01g01674 CCT
Cpe01g00492 Cpe14g00334 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00492 Cpe-Chr1:2843378 Cpe16g00777 Cpe-Chr16:7693043 1.08E-122 dispersed
Cpe01g00492 Cpe-Chr1:2843378 Cpe14g00334 Cpe-Chr14:2027755 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62113 PF00069 Pkinase 3.00E-67 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00492 - - csv:101222182 1040.8