Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00501 ATGGGTCGGCCTCCCAGCAATGGAGGCCCTGCCTTCCGTTTCACTGCTCCCGAGGTTGCGGAGATGGAGGCTATACTGCAAGGACACAATAATACCATGCCGTCTCGGGAAGTTCTGGTTTCTCTTGCTGGGAAGTTCAGTGAATCGGTCGAACGGAAAGGGAAGATTGCTGTGCAAATGAAGCAAGTTTGGAATTGGTTCCAGAATAGGCGATATGCTATCAGAGCAAAGACAACAAAGGTTCCCGGAAAGTTGGCTGGCTCTCCAATTGTCCAAGTCGAGTCAACACCCCCGAGAAATGTGCCTCAAACCATAGTTGTTCCTGCTCCCACACTAGTAGGACCCCTAAAGCGTGCTTCAGAAAATCCACTGTCGGAATTTGAAGCTAAATCTGGGAGGGATGGTGCATGGTATGACGTTGCTACCTTTTTATCCCATAGATCTGTGGAAAGTGGTGACCCGGAAGTACTAGTTAGATTTGCTGGTTTTGGATCAGATGAGGATGAGTGGGTTAATGTCAGAAGGAACATTAGACCTCGTTCGCTACCTTGTGAATCTTCAGAATGTGTGGCAGTTCTTCCAGGCGACCTCATCTTATGCTTTCAGGAGGGTAAAGAGCAGGCACTTTACTTTGATGCCCATGTGCTTGATACACAAAGAAGACGACATGATGTACGAGGTTGTCGCTGCAGGTTTTTGGTCCGTTATGATCACGATCAATCTGAGGAAATTGTTCAGTTGAGAAAGATTTGTCGTCGGCCTGAGACCGACCACAGGTTGCTACAGCTTCATGCTGTAAACGAAGCAGCATCGATGGAGCCCTCACGATCTGGCATGGATTCTGTACTGCTCAGTGGTCAGACGATAAGTTTCGAGGCAACCCAAAAGCTACTCAACAAGGATGCAACCATCGTTATACCAAATGCAAATGCAAATATAAATGTCCATGCCCAAACTAGTACTCAGGAAGCAAGGAATACAATAACTAACAGCGCCCCAGGCGTATTCAACGCTGGTAATCACGCAGGTAGCTCTGCTTCTCGAGCGGTATCATGA 1056 47.73 MGRPPSNGGPAFRFTAPEVAEMEAILQGHNNTMPSREVLVSLAGKFSESVERKGKIAVQMKQVWNWFQNRRYAIRAKTTKVPGKLAGSPIVQVESTPPRNVPQTIVVPAPTLVGPLKRASENPLSEFEAKSGRDGAWYDVATFLSHRSVESGDPEVLVRFAGFGSDEDEWVNVRRNIRPRSLPCESSECVAVLPGDLILCFQEGKEQALYFDAHVLDTQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDHRLLQLHAVNEAASMEPSRSGMDSVLLSGQTISFEATQKLLNKDATIVIPNANANINVHAQTSTQEARNTITNSAPGVFNAGNHAGSSASRAVS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2887891 2893113 - Cp4.1LG01g01690.1 Cpe01g00501 461814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00501 351 CDD homeodomain 13 75 IPR001356 GO:0003677
Cpe01g00501 351 Gene3D - 184 256 - -
Cpe01g00501 351 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 319 - -
Cpe01g00501 351 Gene3D - 124 183 - -
Cpe01g00501 351 SMART HOX_1 7 81 IPR001356 GO:0003677
Cpe01g00501 351 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cpe01g00501 351 SUPERFAMILY Homeodomain-like 4 75 IPR009057 -
Cpe01g00501 351 MobiDBLite consensus disorder prediction 330 351 - -
Cpe01g00501 351 Pfam SAWADEE domain 125 251 IPR032001 GO:0003682
Cpe01g00501 351 Gene3D - 10 82 - -
Cpe01g00501 351 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 319 IPR039276 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00501 - - - cmo:103496064 601.668
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00501 Cpe06g00484 CCT
Cpe01g00501 Cpe14g00345 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00501 Cpe-Chr1:2887891 Cpe06g00484 Cpe-Chr6:2851980 4.93E-67 dispersed
Cpe01g00501 Cpe-Chr1:2887891 Cpe14g00345 Cpe-Chr14:2107933 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g157 . . . . . Bpe08g01000 . . Cmo16g00443 Cmo04g00593 . . . Car09g00555 . Cpe06g00484 . . . . . . . . . . . . . . . Cone6ag0175 Cone9ag0200 Cone14ag1044 Cone15ag1033 . . . . . . . . . . Bma07g01164 . . . Cmo09g00611 Cma04g00558 Cma16g00411 Car04g00528 Car16g00375 Cpe14g00345 Cpe01g00501 . . . . . . . Cla05g00992 Cam05g1083 Cec05g1091 Cco05g1085 Clacu05g1077 Cmu05g1027 Cre05g1101 . . Chy06g01172 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006971 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 2 0 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48755 PF16719 SAWADEE 9.60E-40 CL0049 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00501 Cpe_Chr01 FPKM 0.0 0.0 1.005361 0.681636 0.718523 0.8958 0.933134 0.0 0.0 0.0