Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00507 ATGGCTGCTCAATCGGTCGGCGAAATGGACGGCGGAAATTTCCCTTCGGACCTCGCCTACCAGTCCGGCTTCAACAATCATTTCTCGTCGGAGGCGATTCCCGGTGCTCTTCCTCAATTGCAAAACAGTCCTCTGATATGCCCTTACGGCCTCTATGCTGAGCAGATCTCTGGCACTTCCTTCACATCCCCTCGCAAGGTCAACATGTGCAGTTGGCTGTATCGGATTAAGCCGTCGGTCACGCATGAACCGTTTAGGCCTCGTTTGCCTAAAAACGAGAAGTTGATAAGTGAATTTAATGCGTCAAATTGTTCATCGACTCCAACTCAGCTAAGGTGGAGACCGGCGGATGTTCCTGATTCACCGCTGGATTTCGTTGATGGTCTGTACACTGTTTGTGGAGCCGGCAGTTCGTTTCTTCGGCATGGTTTTGCTATTCACATGTACACAGCCAATAAGTCAATGGAGAACTGTGCGTTCTGTAATGCTGACGGCGACTTCTTGATAGTCCCTCAGAGTGGAAGGCTGTTGATTATTACCGAGTGTGGAAGACTGGAAGTTTCTCCTGGTGAAATAGTGGTTTTACCTCAAGGTTTTCGCTTTGTTGTTTATCTGCCTGATGGTCCATCACGTGGCTACGTAGCTGAGATTTTTGGCAGTCATTTTCAGCTTCCTGATCTCGGACCAATAGGTGCTAATGGTCTTGCTGCACCAAGGGATTTTCTTGCCCCTGTAGCCTGGTTTGAAAATATTTCTCGGCCCGGTTACACAATTGTGCAAAAATATGGTGGGGAATTGTTTACTGCGATACAGGACTTTTCTCCCTTTAATGTAGTTGCCTGGCATGGTAATTATGTTCCCTATAAGTACGATCTTAGTAAGTTCTGCCCTTACAATACTGTGTTATTTGATCACAGTGATCCATCAATAAATACAGTATTAACGGCACCAACTGATAAACCCGGAGTAGCGTTACTCGACTTTGTCATTTTCCCCCCAAGATGGCTCGTCTCTGAACACACATTCCGTCCTCCATATTACCATCGCAACTGCATGAGTGAATTCATGGGTCTCATATATGGAGGCTACGAGGCAAAAGCTGATGGGTTCCTTCCTGGGGGTGCCAGCCTTCATAATTGCATGACTCCCCATGGCCCTGATACTAAAACATACGAGGCCACTATTGCTCGAGGAAACGAGGCTGGACCTTATCGAATCACCGACACAATGGCATTTATGTTTGAATCAAGTCTGATCCCTCGCGTATGCTCTTGGGCTCTGGAGTCTCCATGCATGGATCATGACTACTACCAATGCTGGATAGGATTGAAATCTCATTTCACAAGTGAAGGAACAACTAGAGACATGGATCCACAGAAGGTAAAAACTGATGTTGAAAATGGAAGACAGACTGTGTAG 1419 46.58 MAAQSVGEMDGGNFPSDLAYQSGFNNHFSSEAIPGALPQLQNSPLICPYGLYAEQISGTSFTSPRKVNMCSWLYRIKPSVTHEPFRPRLPKNEKLISEFNASNCSSTPTQLRWRPADVPDSPLDFVDGLYTVCGAGSSFLRHGFAIHMYTANKSMENCAFCNADGDFLIVPQSGRLLIITECGRLEVSPGEIVVLPQGFRFVVYLPDGPSRGYVAEIFGSHFQLPDLGPIGANGLAAPRDFLAPVAWFENISRPGYTIVQKYGGELFTAIQDFSPFNVVAWHGNYVPYKYDLSKFCPYNTVLFDHSDPSINTVLTAPTDKPGVALLDFVIFPPRWLVSEHTFRPPYYHRNCMSEFMGLIYGGYEAKADGFLPGGASLHNCMTPHGPDTKTYEATIARGNEAGPYRITDTMAFMFESSLIPRVCSWALESPCMDHDYYQCWIGLKSHFTSEGTTRDMDPQKVKTDVENGRQTV 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2921516 2925554 + Cp4.1LG01g01600.1 Cpe01g00507 461820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00507 472 Pfam Homogentisate 1,2-dioxygenase C-terminal 293 447 IPR046451 -
Cpe01g00507 472 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 15 449 IPR005708 GO:0004411|GO:0006559|GO:0006570
Cpe01g00507 472 CDD cupin_HGO_N 111 219 - -
Cpe01g00507 472 MobiDBLite consensus disorder prediction 450 472 - -
Cpe01g00507 472 SUPERFAMILY RmlC-like cupins 17 449 IPR011051 -
Cpe01g00507 472 Gene3D Jelly Rolls 280 418 IPR014710 -
Cpe01g00507 472 TIGRFAM hmgA: homogentisate 1,2-dioxygenase 18 447 IPR005708 GO:0004411|GO:0006559|GO:0006570
Cpe01g00507 472 PANTHER HOMOGENTISATE 1,2-DIOXYGENASE 15 449 - -
Cpe01g00507 472 MobiDBLite consensus disorder prediction 450 464 - -
Cpe01g00507 472 Pfam Homogentisate 1,2-dioxygenase N-terminal 19 292 IPR046452 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00507 K00451 HGD, hmgA; homogentisate 1,2-dioxygenase [EC:1.13.11.5] - csv:101206356 912.524
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g149 . . . . . . . . . Cmo04g00599 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1041 Cone15ag1030 . . . . . . . . . . . . . . . Cma04g00562 . Car04g00533 . . Cpe01g00507 . . . . . . . Cla07g00942 Cam07g1018 Cec07g1088 Cco07g1066 Clacu07g0987 Cmu07g0983 Cre07g1357 . . Chy07g00956 Cme07g01326
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009963 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00507 Cpe_Chr01 FPKM 8.902357 6.886065 8.544001 6.837951 16.231602 7.737555 17.86356 5.770361 7.062861 5.127276