Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00516 ATGATTATCTTGAACGCCAAGTACTTTGTTGGCGAACGCAAGAGCGGCGTAGAGGTAGAATCTTTTATCCCGGATCGAGGAATTCCACGCGCAAATTCTGAAATTTGGACTCTGTTCGTGTTACTGTTTGCTTCTTTTCGCATTTGGCCGGCTGAGAAAACCACGAGTAAACAAGTGTCTGTCGTTATCTTGCTTTCCACTACAGGGGAGGAAGTTTCTTCAAGCTTTCATCAGAGATTTGATTCGTTGGATCAGAAATTGAACAATACAGAGGGTGTGATGACTTGTTTCTGTTTTTGTTCAAGAAGAAACAGAGATTCGTTGACTTCCCATACAGCAGCTGCAGAAGCAGCAGCAATCGAAGGGAAGGCTCAGAAATGGAACTCTTGCTGCCATAAAGGTACTATCCATGGACTCAAGCCAAGGAACACGGGAGTTTTTGGCAGAAATCAATGTGATTACGGGCAGCACCGGATTTTGGTCTATCCTTACCTGGAAAATGGCAGCCTTGATAAGATGCTTTTTGACCCTCTTATGATAGGTAGAGGACGAGGAAATACCCAATTCAATTGGCAAACGAGGTGTAAAATATGCATTGGCATTGCACAGGGGCTCACGTTCCTTCATGAGGAAGTTCAGCCCCATGTTGTTCACAGGGACATCAAAGCAAGCAATATCCTGCTTGATAAGGACTTAACTGCAAAAATTTCTGATTTTGGTCTTGCTAGATTACTCCCGTCTCACATGACCCACGTCAGTACATGTATTGCCGGGACAGAAGGTTATCTTGCACCTGAATATGCCATCCGGGGGCAAGCGACAAGAAGAACAGATATTTATAGTTTTGGTGTCTTACTCTTGGAGATTGTATGTGGGAGGTACAACATAAACAAACGGTTGCCTGCTGAGGAACCATATCTTCTAGAAATGGTGTGGAAGCATCATGAGACAGGGCAATTGCTGGAATTGGTAGACATATCATTACATGGAGACTTTGAGGCTGAAGAGGCTTGCAGATATTTAAAAGTTGGTCTTCTTTGCACTCAAGATATGCCAACGCTCCGGCCATCTATGTCAACCGTCGTCAAGATGCTAACGGGTGACATTGATATAACTGATCAAACAATATCTAGACCTGGAATGCTTTCAGAGTTCATGCTTCGAAAAGATGTACTAGGCAAGAAAGCCGAGCCCAATTCGAAGCTTACATCGACGACTGAAGACTCGGGAAAGCAAAGTGAATCAACTTCATCGTCAGGGTTCATGGACACCTCGTACGGTACCATAACCTTCACTTCGATATTTGATCGTAGTAACTGA 1320 43.94 MIILNAKYFVGERKSGVEVESFIPDRGIPRANSEIWTLFVLLFASFRIWPAEKTTSKQVSVVILLSTTGEEVSSSFHQRFDSLDQKLNNTEGVMTCFCFCSRRNRDSLTSHTAAAEAAAIEGKAQKWNSCCHKGTIHGLKPRNTGVFGRNQCDYGQHRILVYPYLENGSLDKMLFDPLMIGRGRGNTQFNWQTRCKICIGIAQGLTFLHEEVQPHVVHRDIKASNILLDKDLTAKISDFGLARLLPSHMTHVSTCIAGTEGYLAPEYAIRGQATRRTDIYSFGVLLLEIVCGRYNINKRLPAEEPYLLEMVWKHHETGQLLELVDISLHGDFEAEEACRYLKVGLLCTQDMPTLRPSMSTVVKMLTGDIDITDQTISRPGMLSEFMLRKDVLGKKAEPNSKLTSTTEDSGKQSESTSSSGFMDTSYGTITFTSIFDRSN 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2966337 2972262 - Cp4.1LG01g01500.1 Cpe01g00516 461829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00516 439 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 155 426 - -
Cpe01g00516 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Cpe01g00516 439 Gene3D Transferase(Phosphotransferase) domain 1 165 377 - -
Cpe01g00516 439 MobiDBLite consensus disorder prediction 396 421 - -
Cpe01g00516 439 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 155 426 - -
Cpe01g00516 439 MobiDBLite consensus disorder prediction 398 421 - -
Cpe01g00516 439 Pfam Protein kinase domain 154 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00516 439 SMART serkin_6 62 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00516 439 SUPERFAMILY Protein kinase-like (PK-like) 152 365 IPR011009 -
Cpe01g00516 439 ProSiteProfiles Protein kinase domain profile. 4 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00516 Cpe-Chr1:2966337 Cpe15g00892 Cpe-Chr15:8578801 7.63E-68 dispersed
Cpe14g00396 Cpe-Chr14:2448029 Cpe01g00516 Cpe-Chr1:2966337 7.23E-38 dispersed
Cpe01g00516 Cpe-Chr1:2966337 Cpe10g00899 Cpe-Chr10:5048944 1.73E-55 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62114 PF00069 Pkinase 1.20E-27 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00516 - - bhj:120074245 473.396