Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00517 ATGGCAATTTCACGTTTAGTACTAGGACCTTTCTCGCCTCTTCTACGCTTCTCTCTCACACCAACCAAGCTCACTCCTCAACTACATTCTCGCAGATACCGCTTCTTCTCCATCCGTGCTGCTATGGCGTCTTCACCTGCTCGCAAGGTTTTGGTTCCGGTTGCGAACGGCACCGAGCCGCTCGAGGCAGTCATCACCATTGACGTTCTTCGACGTGCTGGAGCTGATGTTACCGTCGCTTCCGTGGAGAATCATCTTCGTGTTGATGCAGCTCATCAGATTAAGATTGTTGCTGATTCTCTCATTTCTGATTGCGAGGACACTGTTTTCGATCTCGTCGCACTTCCTGGAGGTATGCCAGGTGCTACCAATTTTAGAGACTGTGCAGTTTTGGAGAACATAGTGAAGAAGCAAGCTGCAGATGGTCGACTTTATGCTGCAATCTGTGCTTCACCGGCAGTGGTGCTTGGCTCATGGGGTTTGCTGAAGGGGTTGAAAGCCACATGCTATCCATCATTTATGGAGCAACTTGGAACTACTGCAACTGCTGTTGAATCCCGAGTACAGATTGATGGCCAAGTAGTGACAAGTCGTGGGCCTGGTACTACCTTGGAGTTTGCTGTTGCGCTGGTTGAGCAGTTGTATGGGAAAGAGAAGGCTGAAGAAGTTTCTGCACCTTTGTTGTTGCGTTCCAACCATGGTCATGAATATACTATTGCTGAGTATAATCAAGAGAAGTGGACATTTGGTGATGGCCCAAGGATTCTCGTACCTATAGCTAATGGCACTGAGGAAATGGAGGCTGTTATGATCATTGACATTCTTCGACGAGCAAAAGGGAAAGTGGTGGTGGCTTCTGTTGAGGACAAACTAGAGATTCTTGCTTCTCGAAAAGTTAAACTGGAGGCAGATTTACTTCTCGATGAGGCTGCTGAACAGTCATACGACCTAATAGTTTTGCCTGGAGGGCTTGGTGGCGCCGAAGCATTTGCAAAATCTGAAAAACTGATTAATCTACTGAAGAACCAGAGAGAATCAAACAAACCCTACGGAGCAATATGTGCATCCCCAGCTCTGGTCTTAGAACCCCATGGTTTGTTGAAGGATAAAAAAGCCACTGCTTTTCCTGCATTGTGCGACAAACTGTCCGACAAAAGCGAAATCGAAAACAGGGTGGTAGTTGACGGAAACCTGATTACAAGCAGGGGACCTGGAACTACGATGGAGTTTTCTTTGGCAATCGTGGAGAAGCTGTTTTGTAGGGACATAGCAGTCCGGCTGGGAAAAACAATGGTCTTCATCAGTGAATAA 1311 47.14 MAISRLVLGPFSPLLRFSLTPTKLTPQLHSRRYRFFSIRAAMASSPARKVLVPVANGTEPLEAVITIDVLRRAGADVTVASVENHLRVDAAHQIKIVADSLISDCEDTVFDLVALPGGMPGATNFRDCAVLENIVKKQAADGRLYAAICASPAVVLGSWGLLKGLKATCYPSFMEQLGTTATAVESRVQIDGQVVTSRGPGTTLEFAVALVEQLYGKEKAEEVSAPLLLRSNHGHEYTIAEYNQEKWTFGDGPRILVPIANGTEEMEAVMIIDILRRAKGKVVVASVEDKLEILASRKVKLEADLLLDEAAEQSYDLIVLPGGLGGAEAFAKSEKLINLLKNQRESNKPYGAICASPALVLEPHGLLKDKKATAFPALCDKLSDKSEIENRVVVDGNLITSRGPGTTMEFSLAIVEKLFCRDIAVRLGKTMVFISE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2973889 2979105 - Cp4.1LG01g01480.1 Cpe01g00517 461830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00517 436 SUPERFAMILY Class I glutamine amidotransferase-like 254 433 IPR029062 -
Cpe01g00517 436 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 44 430 - -
Cpe01g00517 436 CDD GATase1_DJ-1 50 214 - -
Cpe01g00517 436 Pfam DJ-1/PfpI family 48 213 IPR002818 -
Cpe01g00517 436 Pfam DJ-1/PfpI family 254 416 IPR002818 -
Cpe01g00517 436 PANTHER BNAA06G01020D PROTEIN 44 430 - -
Cpe01g00517 436 Gene3D - 250 435 IPR029062 -
Cpe01g00517 436 Gene3D - 40 242 IPR029062 -
Cpe01g00517 436 Coils Coil 284 304 - -
Cpe01g00517 436 CDD GATase1_DJ-1 255 418 - -
Cpe01g00517 436 SUPERFAMILY Class I glutamine amidotransferase-like 48 229 IPR029062 -
Cpe01g00517 436 TIGRFAM not_thiJ: DJ-1 family protein 49 225 IPR006287 -
Cpe01g00517 436 TIGRFAM not_thiJ: DJ-1 family protein 254 426 IPR006287 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00517 K03152 thiJ; protein deglycase [EC:3.5.1.124] - csv:101212934 759.214
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00517 Cpe-Chr1:2973889 Cpe04g00285 Cpe-Chr4:3561726 3.52E-45 dispersed
Cpe01g00517 Cpe-Chr1:2973889 Cpe02g01489 Cpe-Chr2:12801281 1.38E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g126 . . . . Bpe09g00256 . . Bma13g00931 . Cmo04g00612 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00736 . . . . . . . . . Cma04g00572 . Car04g00542 . . Cpe01g00517 . . . . . . . . . . . . . . . Csa04g00801 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012103 0 3 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00517 Cpe_Chr01 FPKM 2.821487 2.567818 2.043489 2.615038 4.851318 5.006195 4.402583 3.476746 3.890667 4.09028