Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00519 ATGTCTCTTCGCAGATCGTTTCTCTCTCGGAGGTTTTCCTCAAAGTCGTTGTATAGAGTTCCAAATGGTGTAGGAGATGGAATTCTTCGAGTTGCTTCGTCGGAGGTCGAAGATGGCTCTGGTCAGCCCAGCGGCGGCCGGATGCAGTCTGAATCTGCTTGGTCCTCCATGCTACCGGAGCTTCTTCGGGAGATCATTCAGCGGGTTGAGGCTTCTGAGGATAGTTGGCCTAACCGCCAGAACGTTGTTTCGTGTGCTTGTGTCTGTAAGCGTTGGCGGGATATTACTAAGGAGGTCGCCAGGGCCGCCCCTCTTTCCGGGAAAATTACTTTCCCTTCCTGCCTCAAACAGCCTGGGCCATGCGATCCTCCGCATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCAACATTTTACCTTTATCTTGCCCTTGCACCATCATTTACAGATAAGGGAAAATTCCTCTTAGCTGCGCGAAGATATAGGCATGGATCTCATACTGAGTATATAATCTCTCTTGATGGTGAAGACTTATCCCAAGGAAGCAATGCTTATTTGGGGAAGTTAAGCTCCGATTTTCTTGGTACCAATTTTACAATCTATGATAGTCAGCCACCACATAACGGTGCAAAGCCATCAAGCAGTAAATCAAGCCGCCGCTTTGCAAGCAAGCAAATTAGCCCACAAGTTTCTGCAGGGAACTTTGAAGTTGGGCAAGTCTCTTACAAATTTAATCTTTTGAAATCAAGAGGCCCAAGGAGAATGATATGCTCTCTGAAGTGCCCAGTATCAGAAGACACTGGCACCAGCAAACCTTATGAGGACTCGAAGATGAAGAAATCCGAGTCCTTTTCTCCTTCATCTGGGTCGACAATCTTAAGAAACAAGGCCCCTAGATGGCATGAGCACCTGCAATGCTGGTGCTTGAATTTTCACGGTCGGGTGACGGTAGCATCCGTTAAAAACTTTCAACTTGTCGCTGCTGTTGACCATAGCCAGCCAGGAGTTAAAGGGGACGAAGAAACAGTCCTCCTACAGTTCGGAAAGGTAGGCGACGACACCTTTACTATGGATTATAGGCAGCCATTATCAGCTTTCCAGGCTTTCGCCATTTGCCTTACGAGCTTCGGCACGAAGTTGGCATGCGAGTAG 1152 47.57 MSLRRSFLSRRFSSKSLYRVPNGVGDGILRVASSEVEDGSGQPSGGRMQSESAWSSMLPELLREIIQRVEASEDSWPNRQNVVSCACVCKRWRDITKEVARAAPLSGKITFPSCLKQPGPCDPPHQCLIKRNKKTSTFYLYLALAPSFTDKGKFLLAARRYRHGSHTEYIISLDGEDLSQGSNAYLGKLSSDFLGTNFTIYDSQPPHNGAKPSSSKSSRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMICSLKCPVSEDTGTSKPYEDSKMKKSESFSPSSGSTILRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAVDHSQPGVKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2985673 2990297 + Cp4.1LG01g01560.1 Cpe01g00519 461832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00519 383 Gene3D - 48 100 - -
Cpe01g00519 383 MobiDBLite consensus disorder prediction 263 290 - -
Cpe01g00519 383 Pfam Tub family 115 378 IPR000007 -
Cpe01g00519 383 Gene3D Tubby Protein; Chain A 110 383 IPR025659 -
Cpe01g00519 383 PANTHER TUBBY-RELATED 1 383 - -
Cpe01g00519 383 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Cpe01g00519 383 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 383 - -
Cpe01g00519 383 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cpe01g00519 383 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cpe01g00519 383 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cpe01g00519 383 PRINTS Tubby superfamily signature 293 310 IPR000007 -
Cpe01g00519 383 PRINTS Tubby superfamily signature 311 327 IPR000007 -
Cpe01g00519 383 PRINTS Tubby superfamily signature 340 359 IPR000007 -
Cpe01g00519 383 PRINTS Tubby superfamily signature 361 383 IPR000007 -
Cpe01g00519 383 ProSitePatterns Tub family signature 2. 368 383 IPR018066 -
Cpe01g00519 383 MobiDBLite consensus disorder prediction 203 223 - -
Cpe01g00519 383 Pfam F-box domain 54 98 IPR001810 GO:0005515
Cpe01g00519 383 ProSitePatterns Tub family signature 1. 311 324 IPR018066 -
Cpe01g00519 383 SUPERFAMILY Tubby C-terminal domain-like 104 383 IPR025659 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00519 Cpe14g00370 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00519 Cpe-Chr1:2985673 Cpe17g00002 Cpe-Chr17:23583 2.49E-135 dispersed
Cpe01g00519 Cpe-Chr1:2985673 Cpe14g00370 Cpe-Chr14:2264319 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48757 PF01167 Tub 2.70E-101 CL0395 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00519 K19600 - csv:101211968 629.402