Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00522 ATGACCGAGCCCAAGCCCGATTCCGATCACATATCTTCGTTTTTCCCTAAATCGCACCGTTCCGGTGCCGACGACCGGAACCCACTTATGGATTTCGATCTCGATTTGGATATTCCTTGGCCGTTGGATCAAACCCCTTTGTTTTCAACTTCCGATCATCTTGCTTCGCCTCTTTGGGCCTTCTCTGAAGCCGATGATGGCGACGATTCCAAATTTGCTGCCTATGCTTGCTCTGTTCTTGGTACTTCCAATTTGAATTCGGTACCGCAAAAGCCGATCGAGAATCACAAGTTTAAGATTCTTCCCGTTCCATCCGAGAATCCAGATGGGTATTGCTTGATCAAGGAAAAAATGGCGCAAGCTCTTCGGTACATTAAGGATTTGTCCGACCAGCAAGTTCTAGCTCAGGTTTGGGCACCTGTAAAGAATGGTGACAAGGTTGTACTTTCGACTTCCGGGCAACCGTTTGTTCTTGATACGCAGAGCAACGGGCTTCATCGGTATAGGTTGGTCTCTTTGACGTATATGTTCTCTTTGGACACTGAGTTGGATGGATCTCTCGGTCTCCCTGGTCGTGTTTTTCAACAAAAGTTGCCTGAATGGACTCCAAATGTGCAGTATTACTCGAGCAAGGAGTATTCACGACTTAGGCATGCTCTTGATTATAATGTTCAGGGAACTTTGGCTTTGCCTGTTTTCGACCCTTCGGGGCAGTCTTGTCTTGGTGTTCTCGAGCTAATCATGACTTCACCGAGGATCAATTATGCACCTGAGGTGGACAAAGTCTGTAAAGCTTTGCAGGCTGTTAATCTAAAAAGTTCAGAGATTTTGGATCGTCCGAATATCCAGATTTGCAACGAAGGCCGACAGAATGCGCTGGCTGAAATCTTGGCTGTACTCACCGTTGTTTGTGAAACCCATAACTTACCATTGGCTCAAACCTGGGTTCCGTGCAGGCACCGAAACGTGCTCGCCAATGGTGGAGGTTTGAAGAAAAGCTGTACTAGCTTTGATGGTAGTTGTATGGGACGGATCTGTATGTCTGCAACTGAAGTAGCATCCTATGTTGTTGATGCTCACAAGTGGGGTTTTCGTGAGGCGTGTTTAGAACACCATTTACAAAAGGGTCAAGGGGTGTCGGGGAGAGCGTTTTCGTCTCACAGCTCGTGTTTTTGTGGAGACATCACTCAATTCTGCAAGAACGAATACCCTTTGGTACACTACGCACTCATGTTCGGATTAAAAAGCTGTTTTTCGATATGCTTACGGAGCAAGTTTACTGGAGACGACGAGTACATTCTAGAATTCTTTCTGCCACCGAGCCTCGTTGATTATCAGGAACAAAAGACTTTGTTGGGTGCAATGATGGCAACAATGAAGCAGCATTTCTACACTCTCAAAGTTGCCTCTGGAATCAAACTCGAGGAAGGTGGAATTGTCGAAGTCGTTCAAGCATCAAGAAACGGAGGGTTCGAATCAAGACTTGAATGTATTCATATTCCACCCGAGTCTGATGCCATGCCGAACACGGGAGAGGTAGTTGCCTTAGAAACATTACAACAACGTTCTTTAATGGTTCACGATGCCCCAAAGGACGAAAACAATACTGTTCGGGACAGGGAAAGCGACAACCCCGTTCCTTGTGTCCAGAAGGAAGTGAAAAAAACGTCCAAAAGGAAGCGTGGAAAAGCCGAGAAGTCGATTAGTCTGGACGTTCTTCAACAATATTTTGCTGGTAGTCTTAAGGATGCTGCTAAAAGCCTTGGCGTTTGTCCGACAACAATGAAGCGTATCTGTAGGCAACACGGGATCTCACGGTGGCCATCTCGAAAGATCAATAAGGTGAATCGCTCTCTTTCAAAGCTAAAACGCGTCATCGATTCCGTTCAAGGGAATGAAGGAACTTTTGGAATGTCTTCTCTTGCTACAAGTCCACTTCCTGTTGCAGTTAGTTCGAGTTCTCATCCGTTAACTCCGGACGGGTCGAATCAAAATTTTTTTTTTGCTTCTCAACCCTCTGATCCTCAACGTAAAGAAACGAACACCTCAGAAGCACAGACAAACAACACCCAGGCTAGACTGAAAGATCAATTACACAGGGGAGTGTCGAACCCGGAAGAACTGTTTCACGAGCAGAATGGATCTCTAATGAAGCTCGGAAATGGCTTCAACAATTTTAGAACAGGAAGCGGATCTCGGGACGAGAGCACCGGGACACCTACATCTCATGGTTCTTGCCAAGGTAGTCCTGCAAATGAGAGTAATCCCCTTTCTATTCACCACCAAGAACAATGTGTAAGAAGAGGCTCTCCTGAAGCAGCAGCCTTCCATCCAATCGACAAACCGAACACATCGACACGTGCTTGTCCAGTTCCCGATACGCTTCTGACGGTTGAGCCGAAGGAACCATTTGGAGGAATGCTGATTAAGGATGCAGGAAGCTCTAAGGACTTAAAAAATCTTTGCACTTCGGTTGCCGATGCCGTTCTCGACGATCAAGTACCTAAATTTTGTTGGCCCAGACCTTCTGATATAGCTATGAGACAACCTATGGAGTCTGTTTGTCACACAGTCCCTCATATATCAGCAAGGCAAGAACCAAGTAGAATGACTATCAAGGCCACTTATAAGGACGATATCATTCGGTTTCAAATTTCCACGTGCACCGGTATTGTGGAGTTACGAGAGGAAGTAGCAAAGAGATTGAAACTAGACGTCGGTACGTTCGATATCAAATACATGGACGACGATCGTGAATGGGTTCTTACTGCTTGCGACGCAGACTTACAAGAGTGTGTAGATATCTCAAAAGCATCAGGTAGCAACATAATAAGATTGTTGGTTCATGATTTATCTGTCAATCTTGGGAGTTCTTGTGAGAGTACTAGGGAGTGA 2895 45.7 MTEPKPDSDHISSFFPKSHRSGADDRNPLMDFDLDLDIPWPLDQTPLFSTSDHLASPLWAFSEADDGDDSKFAAYACSVLGTSNLNSVPQKPIENHKFKILPVPSENPDGYCLIKEKMAQALRYIKDLSDQQVLAQVWAPVKNGDKVVLSTSGQPFVLDTQSNGLHRYRLVSLTYMFSLDTELDGSLGLPGRVFQQKLPEWTPNVQYYSSKEYSRLRHALDYNVQGTLALPVFDPSGQSCLGVLELIMTSPRINYAPEVDKVCKALQAVNLKSSEILDRPNIQICNEGRQNALAEILAVLTVVCETHNLPLAQTWVPCRHRNVLANGGGLKKSCTSFDGSCMGRICMSATEVASYVVDAHKWGFREACLEHHLQKGQGVSGRAFSSHSSCFCGDITQFCKNEYPLVHYALMFGLKSCFSICLRSKFTGDDEYILEFFLPPSLVDYQEQKTLLGAMMATMKQHFYTLKVASGIKLEEGGIVEVVQASRNGGFESRLECIHIPPESDAMPNTGEVVALETLQQRSLMVHDAPKDENNTVRDRESDNPVPCVQKEVKKTSKRKRGKAEKSISLDVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIDSVQGNEGTFGMSSLATSPLPVAVSSSSHPLTPDGSNQNFFFASQPSDPQRKETNTSEAQTNNTQARLKDQLHRGVSNPEELFHEQNGSLMKLGNGFNNFRTGSGSRDESTGTPTSHGSCQGSPANESNPLSIHHQEQCVRRGSPEAAAFHPIDKPNTSTRACPVPDTLLTVEPKEPFGGMLIKDAGSSKDLKNLCTSVADAVLDDQVPKFCWPRPSDIAMRQPMESVCHTVPHISARQEPSRMTIKATYKDDIIRFQISTCTGIVELREEVAKRLKLDVGTFDIKYMDDDREWVLTACDADLQECVDISKASGSNIIRLLVHDLSVNLGSSCESTRE 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3003248 3007818 + Cp4.1LG01g01380.1 Cpe01g00522 461835

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00522 964 SUPERFAMILY CAD & PB1 domains 862 952 - -
Cpe01g00522 964 Pfam RWP-RK domain 568 615 IPR003035 -
Cpe01g00522 964 CDD PB1_NLP 870 950 IPR034891 -
Cpe01g00522 964 MobiDBLite consensus disorder prediction 647 695 - -
Cpe01g00522 964 PANTHER PROTEIN NLP8 43 962 IPR045012 GO:0003700
Cpe01g00522 964 MobiDBLite consensus disorder prediction 719 791 - -
Cpe01g00522 964 Gene3D - 867 952 - -
Cpe01g00522 964 ProSiteProfiles RWP-RK domain profile. 554 635 IPR003035 -
Cpe01g00522 964 Pfam PB1 domain 870 950 IPR000270 GO:0005515
Cpe01g00522 964 MobiDBLite consensus disorder prediction 719 761 - -
Cpe01g00522 964 MobiDBLite consensus disorder prediction 1 26 - -
Cpe01g00522 964 SMART PB1_new 869 951 IPR000270 GO:0005515
Cpe01g00522 964 ProSiteProfiles PB1 domain profile. 869 951 IPR000270 GO:0005515
Cpe01g00522 964 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 43 962 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00522 - - - csv:101212500 1609.73
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00522 Cpe-Chr1:3003248 Cpe06g00022 Cpe-Chr6:113524 4.43E-12 dispersed
Cpe01g00522 Cpe-Chr1:3003248 Cpe14g00447 Cpe-Chr14:2792768 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00522 . 169 964 NLP Transcription Factor Family AT1G64530 50.8 1.0e-208 723.8
Cpe14g00447 . 295 1034 NLP Transcription Factor Family AT4G24020 54.6 5.4e-202 701.4
Cpe01g00522 . 248 964 NLP Transcription Factor Family AT4G24020 53.4 6.9e-197 684.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003291 3 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 2 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48758 PF00564 PB1 9.00E-17 CL0072 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00522 Cpe_Chr01 FPKM 2.71579 2.419647 3.165914 1.840519 2.051654 1.816424 1.718553 0.341666 0.231642 0.481012