Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00528 ATGCCAGACACTTCACCCTTGACCAGAGCCACCATGGGCGTCTGTCTGGTCAAATTTTCTGGCTTGTTGGTTCTTCACGTTCTACTTCTTTGTCTGGCAATCAATAAAAGCACTGGCCTCACCTCTGATGGTGAGGCACTTCTAAGCTTTAGGATGGCAGTTTCCAGTTCTGACGGTGTCATCTTTCAGTGGAGACCAGAGGATCCAAATCCTTGTAACTGGACTGGAGTGGTCTGTGATTCAAAAACGAAGCGAGTTATCTCATTGAAGCTTGGAAGTCACAAGCTGAGTGGGTTCATTGCACCTGAACTTGGGAAGCTAGACCAATTAAAGACCCTAATTCTTTCGGACAACAACCTATATGGAACAATACCATCAGAACTGGGAAATTGCTCGCAGTTGCAGGGAATGTTCTTGCAAAGAAACTACCTAAGCGGAGTGATTCCCTTTGAGCTGGGAAACCTTTCTGAGTTGGAAATGTTAGATGTTTCAAGCAACTCACTTAGTGGAAATATTCCAACATCCCTCGGGAATTTGGATAAGCTCGCTATTCTCAATGTGTCATCAAATTTTTTAATTGGACCAGTACCTTCTGATGGTGTTCTTTCCAAGTTTTCAGAGTCTTCCTTTGTTGGAAATCGTGGTTTATGTGGCAAACAAGTTAGTGTCACTTGCAAAGACAACAACACTGGATCTGGATCAAATTCTGAATCCCCAGGCTCAGGCCAAAATCAAATGAGGAAGAAGTACTCTGGTCGACTACTCATAAGTGCATCAGCTACAGTGGGGGCACTACTACTTGTTGCTCTCATGTGTTTCTGGGGCTCCTTTCTTTTTAAAAGATTTGGAAGAAATGAAAAGAAGGGTCTTGCAAAGAATGTCGGTGGAGGCGCATCAGTTGTGATGTTTCATGGAGACTTGCCATACTCTTCAAAAGACATTATGAAGAAGTTGGAAACCTTGAATGAGGAACACATCATCGGTTCTGGGGGTTTTGGAACAGTTTACAGACTTGCAATGGATGATGGCAATGTATTTGCTTTGAAAAATATTGTAAAGATAAATGAGGGGTTTGATCACTTTTTTGAGAGGGAACTTGAAATTCTTGGAAGCTTAAAGCATCGGTACCTTGTTAATTTGAGAGGATATTGCAATTCTCCCACATCGAAATTGTTGATTTATGATTACCTATCTGGGGGCAGCCTTGATGAGGCCCTTCATGAAAGATCCGAGCCATTAGATTGGGACACACGCTTGAATATTATATTTGGAGCAGCAAAAGGGCTTGCCTATCTGCACCATGATTGTTCACCCAGAATCATACATCGGGATATCAAGTCGAGCAACATATTACTTGATGGCAATCTGGATGCTCGAGTTTCTGACTTTGGACTTGCTAAGCTTCTGGACGATGATAAATCTCACATTACAACCATTGTTGCCGGAACATTTGGTTATTTGGCCCCTGAATACATGCAAAGTGGTAGAGCAACGGAAAAGACCGATGTATATAGTTTTGGAGTCCTGGTACTTGAAGTACTGAGTGGAAAACGACCGACAGATGCATCATTTATTGAGAAAGGCCTGAACATTGTTGGCTGGCTAAATTTTCTTCTCACAGAGAATAGGCAACGAGAAATAGTTGATTCACAATGTGAAGGAGTACAGACAGAAACTCTTGACGCATTGCTCAGGCTTGCTATTCAGTGTGTTTCTTCTAGTCCAGATGATCGGCCGACCATGCACCGAGTCGTCCAGTTCTTTGAGTCTGAGGTTATGACCCCATGCCCAAATATCGAGACAGAGAAAATTGCTCATGGGATTGGGAGTAAGGCTCTGGATGGCATACCCCTACTG 1857 43.03 MPDTSPLTRATMGVCLVKFSGLLVLHVLLLCLAINKSTGLTSDGEALLSFRMAVSSSDGVIFQWRPEDPNPCNWTGVVCDSKTKRVISLKLGSHKLSGFIAPELGKLDQLKTLILSDNNLYGTIPSELGNCSQLQGMFLQRNYLSGVIPFELGNLSELEMLDVSSNSLSGNIPTSLGNLDKLAILNVSSNFLIGPVPSDGVLSKFSESSFVGNRGLCGKQVSVTCKDNNTGSGSNSESPGSGQNQMRKKYSGRLLISASATVGALLLVALMCFWGSFLFKRFGRNEKKGLAKNVGGGASVVMFHGDLPYSSKDIMKKLETLNEEHIIGSGGFGTVYRLAMDDGNVFALKNIVKINEGFDHFFERELEILGSLKHRYLVNLRGYCNSPTSKLLIYDYLSGGSLDEALHERSEPLDWDTRLNIIFGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGNLDARVSDFGLAKLLDDDKSHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLVLEVLSGKRPTDASFIEKGLNIVGWLNFLLTENRQREIVDSQCEGVQTETLDALLRLAIQCVSSSPDDRPTMHRVVQFFESEVMTPCPNIETEKIAHGIGSKALDGIPLL 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3031762 3039916 - Cp4.1LG01g01320.1 Cpe01g00528 461841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00528 619 Gene3D Transferase(Phosphotransferase) domain 1 397 598 - -
Cpe01g00528 619 SUPERFAMILY L domain-like 40 200 - -
Cpe01g00528 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Cpe01g00528 619 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Cpe01g00528 619 SUPERFAMILY Protein kinase-like (PK-like) 303 588 IPR011009 -
Cpe01g00528 619 Gene3D Phosphorylase Kinase; domain 1 293 396 - -
Cpe01g00528 619 SMART serkin_6 321 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00528 619 PANTHER RECEPTOR-LIKE PROTEIN 55 14 597 - -
Cpe01g00528 619 ProSiteProfiles Protein kinase domain profile. 321 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00528 619 Gene3D Ribonuclease Inhibitor 40 227 IPR032675 -
Cpe01g00528 619 Pfam Leucine rich repeat 109 168 IPR001611 GO:0005515
Cpe01g00528 619 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Cpe01g00528 619 Pfam Protein kinase domain 323 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00528 619 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FEI 1 14 597 IPR031071 GO:0004672|GO:0005524|GO:0030244
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00528 Cpe02g00591 CCT
Cpe01g00528 Cpe06g00589 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00528 Cpe-Chr1:3031762 Cpe06g00589 Cpe-Chr6:3606362 4.12E-22 dispersed
Cpe09g01063 Cpe-Chr9:9264529 Cpe01g00528 Cpe-Chr1:3031762 4.93E-15 dispersed
Cpe01g00528 Cpe-Chr1:3031762 Cpe02g00591 Cpe-Chr2:3536733 2.04E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62115 PF00069 Pkinase 9.10E-47 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00528 - - csv:101205992 1105.89