Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00529 ATGGCTGCCATTTCCATCTTCTTCTCTCTCCTCCTCATCTCCGTTGCCTTCACCACCGTCTATGGCGGCGGCATTGGTTTCTCCACCTCTCTCATCCACCGCGATTCTCCACTTTCACCTATCCGCAACCAATCTCTCTCTCACTATGACTGCCTAAATAACGCCATCCGCCGTTCTATCTCCCGTGCCGACGTCCTCTTCCAACGCGCCGCCGCTCTCACCGGCAACACCATCGAATCTCCGATCTCCCCCGGCAGCGGTGAGTATGTAATGTCTGTGTCCCTTGGGACCCCCCCGGTGCCTTACGTGGCCATAGCTGATACGGGCAGCGATCCAGCGTGGACTCAGTGCATGCCATGTAAGCAATGTTACCCCCAATCAGAACCCGTTTTTGACCCAAAAAAATCCTCATCCTTCAGTCCCGTGCCTTGCACGTCCGATAGCTGTACGTCAGTCGGCGACACCACATGTGGGGACCAGCAGTCTTGCGATTACAGTTTCGTGTACGGAGATCAAACCTACTCGAAGGGTGAGTTGGCAACTGATACGATCACAATTGGGTCAACGTCTGTCAACATGGTGATTGGATGTGGCCACGAGAGCGGCGGTGGGTTCGGCACTACCTCCGGTGTCATCGGACTCGCCGGCGGCGATATGTCTATAGTCACTCAAATGAGCAAAAAAAGCTCCGTGAGCCGGAAATTCTCCTATTGCTTACCGCCCGTATCGAGTCAAGGAAGTGGCAAAATCAACTTTGGCGAAAACGCCGTCGTTTCCGGCTCTGATGTCGTTTCAACTCCACTGGGCCCCAGCACGATGTATCAGATAACTCTGGAAGCAATTTCCGTTGGTAACGAACGTCACGCGGTCGGAAAGGCTGTCGCAGAAAACAACATGATTATAGACTCCGGGACCACATTGAGTTACATTCCCAAGGATATGCACGACGGCGTCGTTTCGTCGATGGCGAAGATCATTGGATCGAAGCGGGTGAACGATCCGGGTAACTTTTTTGCTCTGTGCTATTCTCCAGATGGCGACGACCTGAATATTCCGTCCGTTACCGCCCATTTCGCCGGCGGCGCTAACGTGGAGTTGCCGAAGGAGAATATGTTTATCACAGNATTACAGTTTCGTGTACGGAGATCAAACCTACTCGAAGGCCACGAGAGCGGCGGCGGGTTCGGCACTACCTCCGGTGTCATCGGACTCGCCGGCGGCGATATGTCTATAGTCACTCAAATGAGCAAAAAAAGCTCCGTGAGCCGGAAATTCTCCTATTGCTTACCGCCCGTATCGAGTCAAGGAAGTGGCAAAATCAACTTTGGCGAAAACGCCGTCGTTTCCGGCTCTGATGTCGTTTCAACTCCACTGGGCCCCAGCACGATGTATCAGATAACTCTGGAAGCAATTTCCGTTGGTAACGAACGTCACGCGGTCGGAAAGGCTGTCGCAGAAAACAACATGATTATAGACTCCGGGACCACATTGAGTTACATTCCCAAGGATATGCACGACGGCGTCGTTTCGTCGATGGCGAAGATCATTGGATCGAAGCGGGTGAACGATCCGGGTAACTTTTTTGCTCTGTGCTATTCTCCAGATGGCGACGACCTGAATATTCCGTCCGTTACCGCCCATTTCGCCGGCGGCGCTAACGTGGAGTTGCCGAAGGAGAATATGTTTATCACAGTGGCGGATGGTGTGAGTTGCTTGATGTTCACGGCGATGACGGAGAGCGACCCGTTTGGGATTTGGGGGAATATAGCGCAGGGGAATTTCTTGATCGGATATGATTTGGAGCAGAAGAGCTTGTCGTTCAAACCAACCGCCTGTGCTTAG 1842 52.88 MAAISIFFSLLLISVAFTTVYGGGIGFSTSLIHRDSPLSPIRNQSLSHYDCLNNAIRRSISRADVLFQRAAALTGNTIESPISPGSGEYVMSVSLGTPPVPYVAIADTGSDPAWTQCMPCKQCYPQSEPVFDPKKSSSFSPVPCTSDSCTSVGDTTCGDQQSCDYSFVYGDQTYSKGELATDTITIGSTSVNMVIGCGHESGGGFGTTSGVIGLAGGDMSIVTQMSKKSSVSRKFSYCLPPVSSQGSGKINFGENAVVSGSDVVSTPLGPSTMYQITLEAISVGNERHAVGKAVAENNMIIDSGTTLSYIPKDMHDGVVSSMAKIIGSKRVNDPGNFFALCYSPDGDDLNIPSVTAHFAGGANVELPKENMFITXLQFRVRRSNLLEGHESGGGFGTTSGVIGLAGGDMSIVTQMSKKSSVSRKFSYCLPPVSSQGSGKINFGENAVVSGSDVVSTPLGPSTMYQITLEAISVGNERHAVGKAVAENNMIIDSGTTLSYIPKDMHDGVVSSMAKIIGSKRVNDPGNFFALCYSPDGDDLNIPSVTAHFAGGANVELPKENMFITVADGVSCLMFTAMTESDPFGIWGNIAQGNFLIGYDLEQKSLSFKPTACA 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3040921 3042826 - Cp4.1LG01g01340.1 Cpe01g00529 461842

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00529 613 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 489 500 IPR001969 GO:0004190|GO:0006508
Cpe01g00529 613 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 299 310 IPR001969 GO:0004190|GO:0006508
Cpe01g00529 613 Pfam Xylanase inhibitor N-terminal 391 443 IPR032861 -
Cpe01g00529 613 Pfam Xylanase inhibitor N-terminal 89 253 IPR032861 -
Cpe01g00529 613 ProSiteProfiles Peptidase family A1 domain profile. 89 608 IPR033121 -
Cpe01g00529 613 PANTHER OS07G0603500 PROTEIN-RELATED 388 612 - -
Cpe01g00529 613 SUPERFAMILY Acid proteases 387 612 IPR021109 -
Cpe01g00529 613 Pfam Xylanase inhibitor C-terminal 464 608 IPR032799 -
Cpe01g00529 613 Pfam Xylanase inhibitor C-terminal 274 373 IPR032799 -
Cpe01g00529 613 CDD pepsin_A_like_plant 88 373 IPR034161 -
Cpe01g00529 613 PANTHER OS07G0603500 PROTEIN-RELATED 6 374 - -
Cpe01g00529 613 SUPERFAMILY Acid proteases 82 374 IPR021109 -
Cpe01g00529 613 Gene3D Acid Proteases 72 254 IPR021109 -
Cpe01g00529 613 Gene3D Acid Proteases 446 613 IPR021109 -
Cpe01g00529 613 Gene3D Acid Proteases 256 404 IPR021109 -
Cpe01g00529 613 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 6 374 - -
Cpe01g00529 613 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 388 612 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00529 - - K01381 cmax:111480290 699.508
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00529 Cpe14g00442 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00529 Cpe-Chr1:3040921 Cpe01g01706 Cpe-Chr1:11306997 1.40E-123 dispersed
Cpe01g00529 Cpe-Chr1:3040921 Cpe01g00530 Cpe-Chr1:3043619 4.94E-13 tandem
Cpe01g00529 Cpe-Chr1:3040921 Cpe14g00442 Cpe-Chr14:2761556 2.54E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g925 Blo02g01168 . . . . . . . . Cmo16g00568 . . . . . Cpe14g00442 . . . . . . . . . . . . . . . . . Cone6ag0876 . . . . . . . . . . . . . . . . . Cma16g00522 . . Cpe01g00529 . . . . . . . . . . . . . . . . Csa04g00694 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001637 0 2 1 0 0 2 0 3 2 3 1 2 4 3 2 6 2 1 5 3 3 1 3 5 6 2 2 4 3 0 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00529 Cpe_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.11003 0.095958 0.0 0.0 0.0