Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00531 ACCGTTCATGGCGGCGTTGGCGACGGCGGCCATGGCTTCACCACCTCTCTCTTCCACCGCGATTCTTTTCTCTCCCCTCTCTATAACCCATCTCTCTCCCACTATGACCGACTCACCAACGCCTTCCGCCGCTCCTTCTCCCGCTCCGACACCCTCCTCAACCGCGCTGCCGCCGTCTCCACCACTGGCATCCATTCCCGGATCATCCCCGACGACGGCGAGTTCCTAATGTCCATCTCCATCGGAACCCCGAGGGTCAAAATCATGGCCATCGCTGATACCGGCAGCGACCTGACGTGGACCCAGTGCATGCCATGTCACAAATGCTTCAACCAATCATTTCCCATTTTTAATCCACGTCGATCCTTCTCCTACCGCCACGTGTCTTGCACTTCCAATGCTTGCCGCTCTCTCGATGACTATCGCTGTGGACCCGACAACCGAACCTGCAGCTACGGTTATAGCTACGGAGACCAATCCTTTACGTATGGCGACCTAGCATCTGAGAAAATTACTGTTGGATCCTTCAAACTCTACAAGACAGTTATTGGATGTGGCCATGTGAACGGCGGCACTTTCAGCGGAGATACCTCAGGAATTATCGGACTCGGCGGTGGCCCTCTCTCTTTGATCTCTCAAATGAGAAAAATCGCCGCCGTCAAACGGCGGTTCTCGTATTGCTTGCCGACATTCTTCAGTGACAAAAATGTAACAGGCAAAATAAGTTTCGGCAAAAAAGCCATTGTTTCAGGGCGAAAAGTCATTTCTACCCCTCTCGTATTAAAAGAACCCAACACCTTCTATTACGTAACTCTCAAAGCAATGTCCGTTGCAAACAAGCGGTTTAAGGCTGCGAACAACATGTCAGCGGCCGTAGAACGAGGGAATATCCTTATCGATTCCGGTACGACATTGACAATTCTACCCCCGAATTTGTACAAAGGTGTTGCTTCTACATTGGCGCATGTTGTTAAAGCTAAGCGAGTGAATGATCCAACTGGGGTTTTGGATCTCTGCTTCGCCACACGCAGCGTTGATCATTTGAATATTCCGGTCATTACGGCACATTTTGCTGGCGGCGCCGACGTGAAGTTGTTACCGTTGAATACGTTTGCAATGGTAGCTGATAATGTGGCTTGTTTGGCTTTCGTGCCGTCGGCGAACTTTGCCATTTTTGGAAACTTAGCACAGGTGAACTTTTTGGTCGGATACGATCTCGAGCGCAAGAGATTATCCATCGAATCTCCGATCTCCCCCGGTGGTGGTGAGTATGTAATGTCTGTGTCCCTTGGAACCCCCCCGGTGCCTTACGTGGCCATAGCTGATACGGGCAGCGATCCAGCGTGGACTCAATGCATGCCATGTAAGAAATGTTACCCCCAATCAGAACCAGTTTTTGACCCCAAAAAATCCTCATCCTTCAGTCCCGTGCCTTGCACGTCCGATACGTGTAAGTCTGTCGGCGGCACCACATGTGGGGACCAGCAGTCTTGCGATTACAGTTTCGTGTACGGAGATCAAACCTACTCGAAGGGTGAGTTGGCAACTGATACGATCACAATTGGGTCAACGTCTGTCAACATGGTGATTGGATGTGGCCACGAGAGCGGCGGTGGGTTCGGCACTACCTCCGGTGTCATCGGACTCGCCGGCGGCGATATGTCTATAGTTACTCAAATGAGCAAAAAAAGCTCCGTGAGCCGGAAATTCTCCTATTGCTTACCGCCCGTATCGAGTCAAGGAAGTGGCAAAATCAACTTCGGCGAAAACGCCGTCGTTTCCGGCTCTGATGTCGTTTCAACTCCACTGGGCCCCAGCACGATGTATCAGATAACTCTGGAAGCAATTTCCGTTGGTAACGAACGTCACGCGGTCGGAAAGGCTGTCGCAGAAAACAACATGATTATAGACTCCGGGACCACATTGAGTTACATTCCCAAGGATATGCACGACGGCGTCGTTTCGTCGATGGCGAAGATCATTGGATCGAAGCGGGTGAACGATCCGGGTAACTTTTTTGCTCTGTGCTATTCTCCAGATGGCGGCGACGTGAATATTCCGTCCGTTACCGCCCATTTCTCCGGCGGCGCTAACGTGGAGTTGCCGAAGGAGAACATGTTTATCACGGTGGCGGATGGTGTGAGTTGCTTGATGTTCACGGCGATGACGGAGAGCGACCCGTTTGGGATTTGGGGGAATATAGCCCAGGCGAATTTCTTAATCGGATATGATTTGGAGAAGAAGAGCTTGTCTGGCTTCTCCACCACTCTCATCCACCGCGATTCTCCACTTTCACCTATCCGTAACCAATCTCTCTCTCACTATGACCGCCTAAATAACGCCATCCGCCGTTCTATCTCCCGTGCCGACGCCCTCTTCCAACGCGCCGCCGCTCTCACCGACAACTCCATCGAAGCTCCGATCTCCCCCGGCGGCGGTGAGTATGTAATGTCTGTGTCCCTTGGAACCCCCCCGGTGCCTTACGTGGCCATAGCTGATACGGTCAGCGATCCAGCGTGGATTCAATGCATGCCATGTAAGCAATGTTACCCCCAATCAGAACCCATTTTTGACCCCAAAAAATCCTCATCCTTCCGTCACGTGCCTTGCACGTCCGATACATGTAAGTCAGTCAAGGACGACGGGTTCTGTGGGGACCAAGGGTCTTGCGATTACAGTTTCGCGTACGCAGATCATACCTACTCGAAGGGAGAGTTTGGAACTGATACAATCCCCATTGGGTCAACGTCTGTCAACATGCTGTTTGGATGTGGCCACGAGAGCGGCGGCGGGTTCGGCACTACCTCCGGTATCATCGGACTCGGCGGCGGCGACCTGTCTATAGTTACTCAAATGAGAAAAAAAAGCGCCGTGAGTTGGAAATTCTCCTATTGCTTACCGTCCGTATCGAGTCAAGGGAAGGGCAAAATCAACTTCGGCGAAAACGCCGTCGTTTCAGGTCCTGGTGTCGTTTCAACCCCACTGGACCCCAGCATGATGTATCAGATAAGTCTGGAAGCCATTTCCGTTGGTAACGAACGTCACGCGGCCGACATTTCTCTTGCAACAGACAACATGATCGTTGACTCCGGGACCACATTGACTTACATTCCCAAGGTGATACACGACGGCGTCGTTTCGTCGATGGCCAAGATCATTGGATCGAAGCGGGTGAAGGATCCCGGTAACGTTTTTGCTCTGTGCTATTCTTCTGATGGCGACGACGTGAATATTCCGACCGTTACCGCCCATTTCGCCGGCGGCGCTGACGTGGAGTTGTCGAAGGAGAATATGTTTATGACGGTGGCGGATGGTGTGAGTTGCTTGATGTTCAGGTCGTTGATGGAGATCAACGACGTTGGGGTTTGGGGGAATATAGCTCAGGCGAATTTCTTGATCGGATATGATTTGGAGAAGAAGCGCTTGTCGTTCAAACCAACGTTTATTGGATGTGGCCATGTGAACGGCGGCAGTTTCAGCGGAGATACCTCAAGAATTATCGAACTTGGCAGCGACGCTCTATCTTTGCTCTCTCAAATGAGCAAAATCTTCGCTGTCAAACGACAGTTCTCGTATTGCTTGCCGACCTTCTTCAATATC 3600 51.56 TVHGGVGDGGHGFTTSLFHRDSFLSPLYNPSLSHYDRLTNAFRRSFSRSDTLLNRAAAVSTTGIHSRIIPDDGEFLMSISIGTPRVKIMAIADTGSDLTWTQCMPCHKCFNQSFPIFNPRRSFSYRHVSCTSNACRSLDDYRCGPDNRTCSYGYSYGDQSFTYGDLASEKITVGSFKLYKTVIGCGHVNGGTFSGDTSGIIGLGGGPLSLISQMRKIAAVKRRFSYCLPTFFSDKNVTGKISFGKKAIVSGRKVISTPLVLKEPNTFYYVTLKAMSVANKRFKAANNMSAAVERGNILIDSGTTLTILPPNLYKGVASTLAHVVKAKRVNDPTGVLDLCFATRSVDHLNIPVITAHFAGGADVKLLPLNTFAMVADNVACLAFVPSANFAIFGNLAQVNFLVGYDLERKRLSIESPISPGGGEYVMSVSLGTPPVPYVAIADTGSDPAWTQCMPCKKCYPQSEPVFDPKKSSSFSPVPCTSDTCKSVGGTTCGDQQSCDYSFVYGDQTYSKGELATDTITIGSTSVNMVIGCGHESGGGFGTTSGVIGLAGGDMSIVTQMSKKSSVSRKFSYCLPPVSSQGSGKINFGENAVVSGSDVVSTPLGPSTMYQITLEAISVGNERHAVGKAVAENNMIIDSGTTLSYIPKDMHDGVVSSMAKIIGSKRVNDPGNFFALCYSPDGGDVNIPSVTAHFSGGANVELPKENMFITVADGVSCLMFTAMTESDPFGIWGNIAQANFLIGYDLEKKSLSGFSTTLIHRDSPLSPIRNQSLSHYDRLNNAIRRSISRADALFQRAAALTDNSIEAPISPGGGEYVMSVSLGTPPVPYVAIADTVSDPAWIQCMPCKQCYPQSEPIFDPKKSSSFRHVPCTSDTCKSVKDDGFCGDQGSCDYSFAYADHTYSKGEFGTDTIPIGSTSVNMLFGCGHESGGGFGTTSGIIGLGGGDLSIVTQMRKKSAVSWKFSYCLPSVSSQGKGKINFGENAVVSGPGVVSTPLDPSMMYQISLEAISVGNERHAADISLATDNMIVDSGTTLTYIPKVIHDGVVSSMAKIIGSKRVKDPGNVFALCYSSDGDDVNIPTVTAHFAGGADVELSKENMFMTVADGVSCLMFRSLMEINDVGVWGNIAQANFLIGYDLEKKRLSFKPTFIGCGHVNGGSFSGDTSRIIELGSDALSLLSQMSKIFAVKRQFSYCLPTFFNI 1200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3044048 3059896 - Cp4.1LG01g01440.1 Cpe01g00531 461844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00531 1200 Gene3D Acid Proteases 984 1152 IPR021109 -
Cpe01g00531 1200 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 11 414 - -
Cpe01g00531 1200 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 297 308 IPR001969 GO:0004190|GO:0006508
Cpe01g00531 1200 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 1147 1196 - -
Cpe01g00531 1200 PANTHER OS07G0603500 PROTEIN-RELATED 414 751 - -
Cpe01g00531 1200 PANTHER OS07G0603500 PROTEIN-RELATED 1147 1196 - -
Cpe01g00531 1200 PANTHER OS07G0603500 PROTEIN-RELATED 11 414 - -
Cpe01g00531 1200 Gene3D Acid Proteases 414 587 IPR021109 -
Cpe01g00531 1200 SUPERFAMILY Acid proteases 417 750 IPR021109 -
Cpe01g00531 1200 Pfam Xylanase inhibitor N-terminal 424 588 IPR032861 -
Cpe01g00531 1200 Pfam Xylanase inhibitor N-terminal 815 980 IPR032861 -
Cpe01g00531 1200 Pfam Xylanase inhibitor N-terminal 75 244 IPR032861 -
Cpe01g00531 1200 Gene3D Acid Proteases 588 765 IPR021109 -
Cpe01g00531 1200 Gene3D Acid Proteases 244 413 IPR021109 -
Cpe01g00531 1200 SUPERFAMILY Acid proteases 70 412 IPR021109 -
Cpe01g00531 1200 CDD pepsin_A_like_plant 814 1147 IPR034161 -
Cpe01g00531 1200 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 634 645 IPR001969 GO:0004190|GO:0006508
Cpe01g00531 1200 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 1026 1037 IPR001969 GO:0004190|GO:0006508
Cpe01g00531 1200 ProSiteProfiles Peptidase family A1 domain profile. 424 754 IPR033121 -
Cpe01g00531 1200 ProSiteProfiles Peptidase family A1 domain profile. 815 1145 IPR033121 -
Cpe01g00531 1200 CDD pepsin_A_like_plant 423 751 IPR034161 -
Cpe01g00531 1200 CDD pepsin_A_like_plant 74 415 IPR034161 -
Cpe01g00531 1200 Pfam Xylanase inhibitor C-terminal 268 413 IPR032799 -
Cpe01g00531 1200 Pfam Xylanase inhibitor C-terminal 1001 1145 IPR032799 -
Cpe01g00531 1200 Pfam Xylanase inhibitor C-terminal 609 751 IPR032799 -
Cpe01g00531 1200 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 414 751 - -
Cpe01g00531 1200 PANTHER ASPARTIC PROTEINASE CDR1-RELATED 751 1147 - -
Cpe01g00531 1200 Gene3D Acid Proteases 56 243 IPR021109 -
Cpe01g00531 1200 Gene3D Acid Proteases 796 981 IPR021109 -
Cpe01g00531 1200 ProSiteProfiles Peptidase family A1 domain profile. 75 414 IPR033121 -
Cpe01g00531 1200 PANTHER OS07G0603500 PROTEIN-RELATED 751 1147 - -
Cpe01g00531 1200 SUPERFAMILY Acid proteases 809 1147 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00531 - - K01381 cmax:111480290 648.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00531 Cpe-Chr1:3044048 Cpe17g00289 Cpe-Chr17:1920828 2.72E-81 dispersed
Cpe01g01705 Cpe-Chr1:11306290 Cpe01g00531 Cpe-Chr1:3044048 9.03E-13 dispersed
Cpe01g00530 Cpe-Chr1:3043619 Cpe01g00531 Cpe-Chr1:3044048 1.43E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g926 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe01g00531 . . . . . . . . . . . . . . . . Csa04g00695 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001637 0 2 1 0 0 2 0 3 2 3 1 2 4 3 2 6 2 1 5 3 3 1 3 5 6 2 2 4 3 0 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00531 Cpe_Chr01 FPKM 1.178527 0.843099 1.491651 1.571023 1.751926 1.107686 2.277524 2.74651 2.46288 3.019679