Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00536 ATGGGATCCAGCGGGAGTAAACCGTCGTGCAGTTCGCTGCCGTCGCCGCCGCCGTCTTCATCGTCGTTGGCGGCGACTCTTTCGAGTTCCGGGAGAATCCGGAGGAGGAGATCCAAAGGCCGGAGAGTTTTCCAGTGTTCTTGCCTTGGGACGCTCTCTGGATCGCACCATAGCGACAATGACGATAATGATTGTGAAAGTGATAACAAAAAGAATGCTCATTATTGTTCATCTGCAAATCATACTGCTCAAGCATTAGATCAGAAGAAAATTGAGGGTTACAGAAGGGTCAAAGCTGAGGAGTCTGTTGAAGCACCTTGCGTAACGTCGAATGTTGAACTTGATGGATGGGATCAAACCGGTGGTGCTGTTACCGCCCCTAGAGCTGGTAGTACTTCTTCCCATGCAACCTCCCTCGAACCGTTGAAGTCTTCGAGTAACTTCCTTTCTCGCTTTAGTTTTGTTCCCGGTAATGTAAGCTTCAGACTGAGTAGAGCAAGCAGGTTAGGATCATCTAGATCTTATCCTTTGTCTTCAACTAATCTCTCAATGTTGAATGACGAAGACGGGCTTCGTTTGTCGAATGGACCTGTCGGAGGCTTGGATGATCGAGATGAAATGCAGCAAGGTAGGGACTCGCTTCCTGCGTCCTTAGCTAGTGCAACTCATACTCAGTATCATGGAGATGGTCCTGCTAATTTTAGGCTAAATACACTACCTTCTGATCTTTCTACTAACTTACAAGACAATCAGGCAGTTTCTTCTACCCACAATGTGGCTCGTGATTGTGATAATGCCCGAGTAGAGCCTGATGGAAACGTTTCCCATCCTCGAAATCTACCTGAAAATGAAAGCAGTGAGATTAGACAATCTGATAGACAGACTGGATCTAGGGAACCAGTTGAACAGAATTTTCGTTTCAGTCGGACCCTTAGCGTTGGAAGACTCCGAGATAGGGTTCTTCGTAGATCATCGTTATCTGACTTCACATTGTGTCCTCAGCAACAAGAGGGAGAGGAGAGAGATGCTAGTCAGAGTGGCGATGACCGACATGTTCGGACTGCTGAGACAAGGGCTTCATCATCTGAAGATAATGCTATGACCTCTCCAACAACGTCAGGTTATCCAGCTCCTAGTCTATCTAGTTCCCTGTTTAGCACCCAAGATAATGAAATGGAAACCACTCGGCCTCGAGAAGCTAGATATCACGATTTGCTCGAACACCGGTCAAATTTCCTTGAGCGGAGAAGACGAATACGTTCCCAGGTTCGTGCCCTACAGCGGTTGGGAAGTCGCTTTGAGAACCTATCTGGGCACGAGAGATCGTGTATATTATCTGGTCGACATAGGACGGGTCATTGTACTTGTCGTATCAATAATCGTGACACAAATGTAAATGATAACACTGATGCTAGAGCTAGTATATCAAGAATTGTAATGTTAGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTAGTCTTATCGTCCCGTCCTGCATCTTCGATTGGCTCTCTGCCTGCTCCGAACGATATTGTAGATTCTATGCCCGTTAAATTTTATTCCAAGTTGCAAAAGCATCAAAACGAGGAAGCTGCCCAATGCTACATATGCCTGGTCGAGTACGATGAAGGAGACAGCATGAGAGTGTTGCCTTGCCATCATGAGTTTCACACAGCGTGTGTCGATAAGTGGCTGAAGGAAATCCACAGGGTATGTCCACTCTGTCGAGGTGACATATGCAGCAGATCAGATGCGTTACCAGACGATGTCATGTGA 1791 46.51 MGSSGSKPSCSSLPSPPPSSSSLAATLSSSGRIRRRRSKGRRVFQCSCLGTLSGSHHSDNDDNDCESDNKKNAHYCSSANHTAQALDQKKIEGYRRVKAEESVEAPCVTSNVELDGWDQTGGAVTAPRAGSTSSHATSLEPLKSSSNFLSRFSFVPGNVSFRLSRASRLGSSRSYPLSSTNLSMLNDEDGLRLSNGPVGGLDDRDEMQQGRDSLPASLASATHTQYHGDGPANFRLNTLPSDLSTNLQDNQAVSSTHNVARDCDNARVEPDGNVSHPRNLPENESSEIRQSDRQTGSREPVEQNFRFSRTLSVGRLRDRVLRRSSLSDFTLCPQQQEGEERDASQSGDDRHVRTAETRASSSEDNAMTSPTTSGYPAPSLSSSLFSTQDNEMETTRPREARYHDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHERSCILSGRHRTGHCTCRINNRDTNVNDNTDARASISRIVMLAEALFEVLDEIHQQSVVLSSRPASSIGSLPAPNDIVDSMPVKFYSKLQKHQNEEAAQCYICLVEYDEGDSMRVLPCHHEFHTACVDKWLKEIHRVCPLCRGDICSRSDALPDDVM 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3080649 3084998 + Cp4.1LG01g01370.1 Cpe01g00536 461849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00536 596 MobiDBLite consensus disorder prediction 125 139 - -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 282 296 - -
Cpe01g00536 596 Pfam Ring finger domain 538 581 IPR001841 -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 119 139 - -
Cpe01g00536 596 ProSiteProfiles Zinc finger RING-type profile. 539 581 IPR001841 -
Cpe01g00536 596 CDD RING-H2_PA-TM-RING 538 581 - -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 359 391 - -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 170 303 - -
Cpe01g00536 596 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 587 - -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 331 402 - -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 170 188 - -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 341 358 - -
Cpe01g00536 596 SUPERFAMILY RING/U-box 517 592 - -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 1 41 - -
Cpe01g00536 596 SMART ring_2 539 580 IPR001841 -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 1 31 - -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 237 261 - -
Cpe01g00536 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 502 586 IPR013083 -
Cpe01g00536 596 MobiDBLite consensus disorder prediction 213 227 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00536 Cpe14g00432 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00536 Cpe-Chr1:3080649 Cpe18g00538 Cpe-Chr18:5990311 7.81E-48 dispersed
Cpe14g01037 Cpe-Chr14:8713429 Cpe01g00536 Cpe-Chr1:3080649 6.82E-10 dispersed
Cpe01g00536 Cpe-Chr1:3080649 Cpe14g00432 Cpe-Chr14:2712147 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00536 - - cmax:111479412 1060.44