Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00545 ATGTCTGATCCTCAGAACGACGCCGTTCTTGCTTACCAAACCAATAATGTCCACCATCAGCTTCCCCTTCTCACAGTTACTCTCAAGTTTGAAGAACTCGTTTATAAAGTGAAATTACAAGGGAAAGGCGGCGGCTGCTTTGGCGGCGGCGGTGGTTCGTTGGAAGCTACTAGAGAAAAAACCATTCTCAATGGCCTTAGTGGCGTTGTCTTACCCGGGGAAATCCTTGCCATGCTTGGCCCTTCCGGCAGCGGTAAAACTACCCTTTTGACGGCTCTTGGCGGCCGTTTATCCGGGAAACTCTCCGGTAAAATCACTTACAACGGCCAGCCATTTTCCGGCGCCACCAAGCGCCGGACTGGGTTTGTTGCTCAAGATGACGTTTTGTACCCTCATTTAACCGTTGCTGAAACCCTTCTCTTCACTGCCCTTCTCCGCCTCCCTTCCTCCCTGACCGCCGATGACAAAGCCCAAGCCGTTGAGCGAGTCATCTCCGAGTTGGGTCTGACTCGGTGTCGCAATAGTATGATCGGCGGCCCACTTTTCCGGGGAATCTCCGGCGGAGAGAAGAAAAGAGTTAGTATTGGTCAAGAGATGCTGATTAACCCAAGCTTGCTGTTGCTGGATGAGCCTACCTCCGGCTTGGACTCGACCACTGCCATGAGAATTCTTACCACCATTAAACGGTTAGCGAGTGGCGGAATTGCCCCTGATTCAAAGTATGCAAATGAGGGAGGAGAGAACATAGAAGAAGAACAAAAGGGAGTGAAGGAAGCACTAATTTCAGCTTATGACAAGAACATTTCCTCCACTTTGAAGGCTGAGCTTTGCAGTTTGGATGCCAATAACTTCACCAACTATGCAAAAGATGCCTCAAAGAGAGAAAGGAAATGCACAGAGGAGTGGTGCACCAGCTGGTGGTATCAATTCAGAGTGCTGTTGCAGAGAGGGCTGAAGGAGAGACGATATGACGCCTTCAATCGCCTGAGGATTTTTCAAGTCATTAGCGTTGCTTTTCTTGGTGGACTCCTTTGGTGGCACACTCCATCCTCTCACATTGAAGATCGCATAGCGTTGCTGTTCTTCTTCTCAGTATTTTGGGGGTTCTACCCACTGTACAACGCAGTGTTCACATTCCCACAAGAGCGCAGCATGCTAATAAAGGAGCGCTCATCCGGCATGTACCGTCTGTCCTCCTACTTTCTAGCGCGCACAGTGGGCGACCTCCCATTAGAGCTGGCCCTCCCCACAGCCTTCGTATTCATAATCTACTTCATGGGAGGCCTCAACCCCCACCCACCCACCTTCCTCCTCTCCCTCCTCATCGTCCTCTACAGCGTCCTCGTCTCCCAAAGCCTCGGCTTGGCCTTCGGCGCCATCCTCATGGACGTCAAGCAGGCCACCACCCTCGCCTCCGTCACCACCCTCGTCTTCCTCATCGCCGGCGGCTACTACATCCAACAAATCCCCCCCTTCATCCTCTGGATGAAGTACCTCAGCTACAGCTACTACTGCTACAAGCTGCTCCTGGGTGTGCAGTATCAAAACGACGACGTTTACGAGTGTCGGAATGGGGAGCTTTGTCGGGTGGCGGATTTCCCGGCCGTTAAATCTGTCGGGTTGGATGGGCTGTGGGTTTGTGTCTGTATTATGGCGCTCATGTTGGTGGGTTACCGCTTGATTGCGTATTTGGCTCTTCATAGGGTCAGATTGAGATGA 1719 51.89 MSDPQNDAVLAYQTNNVHHQLPLLTVTLKFEELVYKVKLQGKGGGCFGGGGGSLEATREKTILNGLSGVVLPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGATKRRTGFVAQDDVLYPHLTVAETLLFTALLRLPSSLTADDKAQAVERVISELGLTRCRNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAMRILTTIKRLASGGIAPDSKYANEGGENIEEEQKGVKEALISAYDKNISSTLKAELCSLDANNFTNYAKDASKRERKCTEEWCTSWWYQFRVLLQRGLKERRYDAFNRLRIFQVISVAFLGGLLWWHTPSSHIEDRIALLFFFSVFWGFYPLYNAVFTFPQERSMLIKERSSGMYRLSSYFLARTVGDLPLELALPTAFVFIIYFMGGLNPHPPTFLLSLLIVLYSVLVSQSLGLAFGAILMDVKQATTLASVTTLVFLIAGGYYIQQIPPFILWMKYLSYSYYCYKLLLGVQYQNDDVYECRNGELCRVADFPAVKSVGLDGLWVCVCIMALMLVGYRLIAYLALHRVRLR 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3141466 3145277 + Cp4.1LG01g01210.1 Cpe01g00545 461858

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00545 572 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 306 IPR003439 GO:0005524
Cpe01g00545 572 Pfam ABC-2 type transporter 308 514 IPR013525 GO:0016020|GO:0140359
Cpe01g00545 572 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 23 234 - -
Cpe01g00545 572 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 237 568 - -
Cpe01g00545 572 Pfam ABC transporter 64 213 IPR003439 GO:0005524
Cpe01g00545 572 SMART AAA_5 72 332 IPR003593 -
Cpe01g00545 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 59 234 IPR027417 -
Cpe01g00545 572 Gene3D - 53 236 IPR027417 -
Cpe01g00545 572 ProSitePatterns ABC transporters family signature. 185 199 IPR017871 GO:0005524
Cpe01g00545 572 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 23 234 - -
Cpe01g00545 572 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 237 568 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00545 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - vvi:100247745 804.668
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00545 Cpe14g00425 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00545 Cpe-Chr1:3141466 Cpe14g00687 Cpe-Chr14:4512022 5.95E-168 dispersed
Cpe14g00688 Cpe-Chr14:4517189 Cpe01g00545 Cpe-Chr1:3141466 5.32E-08 dispersed
Cpe01g00545 Cpe-Chr1:3141466 Cpe14g00425 Cpe-Chr14:2654343 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001139 3 3 3 3 3 2 2 2 2 2 2 2 4 2 2 4 2 5 4 2 2 2 2 3 3 1 3 3 3 3 79
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00545 Cpe_Chr01 FPKM 30.751917 29.555302 31.934418 32.345745 10.994158 11.170423 12.657042 1.916203 1.59593 1.483477