Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00548 ATGGGGGAAGAAATGGAGCAACTGGTAAACATGGGTTTTCCCGACGAACTGGCGGCGCAAGCTTTAGCTGCTACCGGCGGTAAGTCTACTCTCAAAGCCACGGAATGGATTCTCACACATAAATCCTCTTCTTGTTCTTCTCCTTCACCTTCACCTTGCCCCAAGCCCAATCTCCCTATTTCGAACCCTAATGTCCAGCCCAAGCTCGACCGCTTCTTCCTCTTCCAGTCCCGCCCTCCGACCACGCCCTCCGCTGCGCTTCCTCAATCGGTTCAGAAACGAGACCCTGCTGCTATCGATTCCGACGTTGCTGACCTTAACCTCCCCCAACTCTCCTCTAAGCGTCCGAAACTCTTGTCCTCCTCGATCGTATCGGTACCGGATTCTTCTGCTGGGAAGGGGAATCAGCCTCCGGACGAGCCTCTGTCGGAGCGGATGCGGCCTCGAAATGTCGATGATGTGGTAGGGCAAGATCATCTACTGGCGAAGAATTCGATACTTCGTTCTGCGCTGGAATGTAATCGATTGCCTTCGATTATCCTTTGGGGTCCGCCTGGTACAGGTAAGACCTCCATTGCCAAAGCTATTGTAGGTTCCACTTCTTCTTTCTCTCAGTCTTTTCGATTTGTGTCCCTGTCTGCTGTGACTTCGGGCGTTAAGGACGTTAGGGATGCTGTTGAGGAAGCTAGAAAAACTAGAATCAAGAACAATAAGAGGACTGTTTTGTTTCTGGATGAGGTTCACAGGTTCAACAAATCCCAACAGGATTCCTTTTTGCCTGTCATTGAAGATGGAAGCATCATCTTCTTGGGTGCCACTACCGAGAATCCTTCTTTCCATTTGATCACCCCTTTGTTGTCTAGATGTAGAGTTCTTACACTTAACGTATTGAAACCCCACCATGTTTCCGTGATTTTAAAACGAGCTATTGATGATTCTGAGAAGGGACTAGCTCGAACTATTTCCATGGGGGTTCAGGTTGGGGATGAGGCCATTGATTTCTTAGCTGCTAATTGTGATGGCGATGCCAGGACTGCTTTGAATGCATTGGAGATCTCTGCTATCACTGCTGCAGCCCGATCCAACCCCGCCCAAATTGACGATTGCAATGTAGAAGATGCCAACGGGAATGCCGTAAGGAATCGAGGCGACACGGCCTCATCATCGTCTGGGGCCGTTGTTACTCTTGATGATGTGAAGGAGGCACTCCAATGTAAGCATCTTGCTTATGATAAAGCAGGGGAGGAGCACTACAATCTCATAAGTGCACTTCATAAATCCTTGAGAGGGAGCGATGCAGATGCTTCAATTTATTGGTTGGCAAGAATGTTGGAAGGTGGAGAACAGCCTCTGTATATAGCTAGAAGACTTGTAAGGTTTGCAAGCGAAGACGTCGGGTTGGCCGATCCATTGGCTCTGAATCAGGCTGTTTCTTGCTATCAAGCCTGCCATTTCATTGGCATGCCCGAGTGCAATGTCATTCTCGCGCAATGTGTGGCTTACTTAGCACTCGCCCCGAAGTCAATTGCGGTGTACCAAGCCATGGGAGCTGCACAGAAGGCTGTGAGGGAATCAGTTGGGCAAAATGAAGGCGTGCCTCTTCATCTTAGGAATGCTCCAACAAAGCTGATGAAGGAAATTGGATATGGGAAAGGCTATATTTACACCCCAGACAATCCCTCCGCAGCTCAAAGCTTTCTTCCACCATCTCTTCAAGGTTACAAATTTCTCAACTGGCCAGAATCACAAGGTACACAAAAATGA 1764 48.75 MGEEMEQLVNMGFPDELAAQALAATGGKSTLKATEWILTHKSSSCSSPSPSPCPKPNLPISNPNVQPKLDRFFLFQSRPPTTPSAALPQSVQKRDPAAIDSDVADLNLPQLSSKRPKLLSSSIVSVPDSSAGKGNQPPDEPLSERMRPRNVDDVVGQDHLLAKNSILRSALECNRLPSIILWGPPGTGKTSIAKAIVGSTSSFSQSFRFVSLSAVTSGVKDVRDAVEEARKTRIKNNKRTVLFLDEVHRFNKSQQDSFLPVIEDGSIIFLGATTENPSFHLITPLLSRCRVLTLNVLKPHHVSVILKRAIDDSEKGLARTISMGVQVGDEAIDFLAANCDGDARTALNALEISAITAAARSNPAQIDDCNVEDANGNAVRNRGDTASSSSGAVVTLDDVKEALQCKHLAYDKAGEEHYNLISALHKSLRGSDADASIYWLARMLEGGEQPLYIARRLVRFASEDVGLADPLALNQAVSCYQACHFIGMPECNVILAQCVAYLALAPKSIAVYQAMGAAQKAVRESVGQNEGVPLHLRNAPTKLMKEIGYGKGYIYTPDNPSAAQSFLPPSLQGYKFLNWPESQGTQK 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3153800 3155563 - Cp4.1LG01g01150.1 Cpe01g00548 461861

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00548 587 MobiDBLite consensus disorder prediction 41 65 - -
Cpe01g00548 587 Gene3D - 132 296 IPR027417 -
Cpe01g00548 587 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 17 583 - -
Cpe01g00548 587 SUPERFAMILY UBA-like 4 42 IPR009060 GO:0005515
Cpe01g00548 587 PRINTS CbxX/CfqX superfamily signature 178 193 IPR000641 GO:0005524
Cpe01g00548 587 PRINTS CbxX/CfqX superfamily signature 229 248 IPR000641 GO:0005524
Cpe01g00548 587 PRINTS CbxX/CfqX superfamily signature 375 387 IPR000641 GO:0005524
Cpe01g00548 587 Pfam UBA/TS-N domain 5 37 IPR015940 -
Cpe01g00548 587 CDD HLD_clamp_RarA 297 374 - -
Cpe01g00548 587 Pfam ATPase family associated with various cellular activities (AAA) 179 291 IPR003959 GO:0005524|GO:0016887
Cpe01g00548 587 Gene3D - 508 587 - -
Cpe01g00548 587 MobiDBLite consensus disorder prediction 123 149 - -
Cpe01g00548 587 Gene3D - 297 371 - -
Cpe01g00548 587 Gene3D - 404 507 - -
Cpe01g00548 587 MobiDBLite consensus disorder prediction 76 95 - -
Cpe01g00548 587 CDD AAA 155 290 - -
Cpe01g00548 587 Gene3D - 3 53 - -
Cpe01g00548 587 SMART AAA_5 175 297 IPR003593 -
Cpe01g00548 587 Pfam AAA C-terminal domain 325 429 IPR032423 -
Cpe01g00548 587 SUPERFAMILY post-AAA+ oligomerization domain-like 414 580 IPR008921 GO:0003677|GO:0006260
Cpe01g00548 587 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 369 IPR027417 -
Cpe01g00548 587 Pfam MgsA AAA+ ATPase C terminal 430 580 IPR021886 -
Cpe01g00548 587 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 40 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00548 K07478 ycaJ; putative ATPase - csv:101220463 907.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00548 Cpe-Chr1:3153800 Cpe13g00630 Cpe-Chr13:6038030 2.43E-10 dispersed
Cpe01g00548 Cpe-Chr1:3153800 Cpe01g02062 Cpe-Chr1:17463372 8.88E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00651 . . . . . . Cpe01g00548 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013516 0 1 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00548 Cpe_Chr01 FPKM 1.088961 0.977058 10.447534 9.681205 13.384233 12.53526 13.610314 15.361975 14.277113 15.006281