Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00551 ATGGATTTGCGGCGTGCTTCCTTGCCTTATTTCGATCTTCTGTGGCGAATTTTATCAGAGGTGGCCAAATTAAGCGGGAAATTTGGAAAATTTGAGTGGGAATCAGTTCTTCCACCACCTAGCGTTGCGGCCTCCTGCGGCGAATTTCATCTGAGTAATGGACTTCAACACCCAGAGGAATGCTACGAAGTTACTGTGGCGAATTTCATTTGGATTAAAAGGAGAAACTTTCTGCAGGTCTTTTGGTTCACTGTAGTTAACTATATGCAAGCAAGCAGCAGTAATCTGCTCCATTCATTATGGGCACAACCATTGACTCTTCTCATCATGGATATAGATCTTAGGTTGCCTTCTGGTGAGCATGACAAAGATGAAGAATCAAATGCAATTAATAATATGTTGGATGTGAAAGAAAAACTTCATAATGGAGTTATTGGGAGTGGAAGTATGGTTGATACTACAGAGGGGATGCACATTGAAGATGGTGGAGATTTAAATCCTCCTCTGTTAGACATGGTAGTGTTTAAAGAGGACACAAATTTGGAACCACTTCCTGGTATGGAATTTGAATCACACAGTGAAGCATATTCCTTTTATCAGGAATATGCTCGCTCTATGGGATTCAACACAGCAATACAAAATAGCCGCCGTTCAAAGACATCAAGGGAATTTATTGATGCAAAATTTGCTTGTTCCCGTTATGGTATGAAGAGAGAGTATGATAAGTCCTTCAATCGTCCACGTATAAGGCAAACTAAACAAGAAAGTGAAAATTCAACTGGTCGAAGAGCATGTGCGAAGACAGACTGCAAAGCTAGCATGCATGTGAAGAGGAGGGCGGATGGTAAATGGGTTATTCATAGTTTTTTTAAGTTGCATAACCACGAGCTTTTACCAGCTCAAGCTGTCAGTGAACAAACAAGAAAGATGTATGCTGCGATGGCTAGGCAGTTTGCTGAATACAAAAATGTGGGATCTTTGTACCGAGAGAGTTACAGTATTGCAGTGCATGCACTCGATGAAACGCTTGGACATTGTATTGGTATCAATAGTTCTAACAGAACTGTTTTAGAAGCTGGTACATCGGCAGCTCAAGGTCTACTCTGCATTGAAGACGACAATCAGATTAGAAACATAGGCAAGACAAACAAGAAAAAAAATCCAACTAAGAAACGGAAGGTGAATTTCGAGTCTGATGTCATGACTGTTGGAGCACAAGATAGCTTGCAGCAGATGGACAAATTAAGCTCAAGAGCAGTAACCCTTGATGGCTTTTTTGGCACACAGCCAAGTGTGCAAGGAATGGTACAACTTAACTTAATGGCACCAACCCGTGATAATTATTATGGAAATCAACAGGCCATCGGAGGGCTGGGGCAATTAAACTCAATAGCACCTAGCCATGATGGTTATTATGCTGATCAACAGAGTATCCATGCACTGGGACACATGGATTTCTTCCGAACACCGACTGGTTTCACCTATGGCATACGGGTCAAAGCTAAAGGTTTATATGGTCCGATGCTATCAAAGCCCTTGTTATCTAAATGGCGGCCAGAGCAGGATAAGAGAGGTTTGGGGAAGTTCCACAGTTCGATAAATTTCTTACCCGTGAAGATTATAGTCATCTTCATCAACCAATCACAGCGTGGCAAAACCCAAAAGCGAGTGAATTTGACCCAATTCTTCCCCACAGTTTTGAATCGGCGAGTGAGTTTCAAGCCCTACTTTCCCCAATCGAAGGAACCCCCTTCCCCACTCGCGCAAATCCTCCACTCGCTGCTACAGCCTTTTGCTTCGCTTCCCGGATTCTTAAGAAACCGTTCTTTCTTCAGAGATGATGGAATTGTTAGTTTACCAAAGGACATCCTGTTTGAAAGGGACATAGATTTTGAGCCACGGAGTGGAATTGAATTTGAATCCCACGAAGCTGCATACACATTTTATCAAGAGTATGCCAAATCAATGGGATTCACCACATCGATTAAGAATAGTCGACGTTCAAAGAAATCAAAAGAGTTTATTGATGCAAAATTTGCATGTTCAAGATATGGAGTTACTCCAGAATCTGAGAATGGAAATAGTCGAAGGCCAAGCATGAAAAAAACCGACTGTAAAGCCAGTATGCATGTGAAGAGAAGGCCAGATGGAAGATGGATTATTCATGAGTTCATAAAAGATCATAATCATGAGTTTTTACCTGCTCTTGCATATCATTTCCGCATCCATAGGAATGTAAAGCTTGCAGAGAAGAACAACATCGACATATTACATGCTGTTAGTGAAAGAACACGGAGGATGTATGTTGAGATGTCGAAAAAACGTGGCGTGTACAGAAATGTCGCTATTGAATTAAGTGAAGAAGGATCACAATCAGAGGAGTGTTATAATATTGTCATTCGTGCATTAGTAGAAGCTCTGAAGAATTGTGTCAATATTAACAACTCAAAAAGTGCTCCAGCAGAATCGAGCGTTAATGTCTACGGTCTACGTGAGGAAGAGGAGAACCAAGAAAGCATAGCTGCTAAAGCAAATAAGAGGAGTACGAACAGAAAACGAAAGGTACAAACAGAAACAGATATGATACTTGATGAATCCCAGAACAACTTGCAGCAAATGGATGGTTTAATCTCAGATAGCATGACCCTGAGTGGATATTATGGATCCCAACAGAATGTTCAAGGATTGGTACAGTTGAACTTGATGGAGCCTCCCCGCGATGCGTCGTATTATGTCAATCAACAAAGTATTCAAGGGCTGGGACAATTGAATACAATTACAGCCAGTCAGGATGGGTTTTTTGGGGCGCAGCATAATGGCATTCATGCACTGGTGGATTATCGGCCAGCAACAAGTTATAGTTATAGTTTACAGGATGAGCAACATTTAAGATCTGCCCAGCTTCATGGCAGTACTTCAAGACATACTTGA 2931 41.49 MDLRRASLPYFDLLWRILSEVAKLSGKFGKFEWESVLPPPSVAASCGEFHLSNGLQHPEECYEVTVANFIWIKRRNFLQVFWFTVVNYMQASSSNLLHSLWAQPLTLLIMDIDLRLPSGEHDKDEESNAINNMLDVKEKLHNGVIGSGSMVDTTEGMHIEDGGDLNPPLLDMVVFKEDTNLEPLPGMEFESHSEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGMKREYDKSFNRPRIRQTKQESENSTGRRACAKTDCKASMHVKRRADGKWVIHSFFKLHNHELLPAQAVSEQTRKMYAAMARQFAEYKNVGSLYRESYSIAVHALDETLGHCIGINSSNRTVLEAGTSAAQGLLCIEDDNQIRNIGKTNKKKNPTKKRKVNFESDVMTVGAQDSLQQMDKLSSRAVTLDGFFGTQPSVQGMVQLNLMAPTRDNYYGNQQAIGGLGQLNSIAPSHDGYYADQQSIHALGHMDFFRTPTGFTYGIRVKAKGLYGPMLSKPLLSKWRPEQDKRGLGKFHSSINFLPVKIIVIFINQSQRGKTQKRVNLTQFFPTVLNRRVSFKPYFPQSKEPPSPLAQILHSLLQPFASLPGFLRNRSFFRDDGIVSLPKDILFERDIDFEPRSGIEFESHEAAYTFYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESENGNSRRPSMKKTDCKASMHVKRRPDGRWIIHEFIKDHNHEFLPALAYHFRIHRNVKLAEKNNIDILHAVSERTRRMYVEMSKKRGVYRNVAIELSEEGSQSEECYNIVIRALVEALKNCVNINNSKSAPAESSVNVYGLREEEENQESIAAKANKRSTNRKRKVQTETDMILDESQNNLQQMDGLISDSMTLSGYYGSQQNVQGLVQLNLMEPPRDASYYVNQQSIQGLGQLNTITASQDGFFGAQHNGIHALVDYRPATSYSYSLQDEQHLRSAQLHGSTSRHT 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3167494 3180030 - Cp4.1LG01g01180.1 Cpe01g00551 461864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00551 976 MobiDBLite consensus disorder prediction 687 708 - -
Cpe01g00551 976 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 157 325 IPR031052 GO:0006355
Cpe01g00551 976 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 782 912 IPR031052 GO:0006355
Cpe01g00551 976 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 604 739 IPR031052 GO:0006355
Cpe01g00551 976 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 157 325 - -
Cpe01g00551 976 Pfam FAR1 DNA-binding domain 197 299 IPR004330 -
Cpe01g00551 976 Pfam FAR1 DNA-binding domain 647 733 IPR004330 -
Cpe01g00551 976 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 325 452 IPR031052 GO:0006355
Cpe01g00551 976 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 325 452 - -
Cpe01g00551 976 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 604 739 - -
Cpe01g00551 976 PANTHER FAR-RED ELONGATED HYPOCOTYLS 3-RELATED 782 912 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00551 - - - csv:101210784 412.149
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00551 Cpe14g00416 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00551 Cpe-Chr1:3167494 Cpe14g00417 Cpe-Chr14:2618967 7.48E-38 dispersed
Cpe19g01213 Cpe-Chr19:8167234 Cpe01g00551 Cpe-Chr1:3167494 1.23E-33 transposed
Cpe01g00551 Cpe-Chr1:3167494 Cpe14g00416 Cpe-Chr14:2609955 4.67E-83 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00656 . . . . . Cpe14g00416 Cpe01g00551 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48761 PF03101 FAR1 6.70E-26 CL0274 Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00551 Cpe_Chr01 FPKM 5.723547 6.315613 6.295762 6.81295 7.391255 5.324447 8.02023 5.570376 5.34157 6.395673