Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00552 ATGGTGAGGAAACATGGATGGCAACTGCCTGCTCATACTTTTCAGGTCGTCGCAATTACTGTCTTTTGCTTGCTAGTGGTGGCGTTCTATGCTTTCTTTGCTCCTTTCCTTGGAGGCCATATCTGGGAGTACATACTGATTGGCGTTTATTCACCAGTGGCACTCCTTGTATTCATTCTTTATGTTAGATGTACTGCAATTAATCCTGCCGACCCTGGTATTATGTTCAAATTTGATAATCGGAAAACAAACCCCAACAATAATCAAGGTTTATCATTGAAGAGTTTACCACAAAATTTAGATGAAATGGTCAACAGTAGACATTCTTCCGCATCATCAGCTTCCAGAAGTTCCATATCAGGACCTAATATGAGTAGGAATGGGTCAGTAGGAGACATTGGAAGAGTAGACAATCCAATGGAACAACCAACAGTCCGTAGTGCTGATAATATTGCACTAGTTTGTTGTGCATTATTTGTACATGAAGATTGTCGAAAAAGGGATGGAACAGCTGACCCTCTAAGTGCTGCCGAGGATGCTTTATTCTGCACGTTGTGCAATGCTGAGGTGCGCGAGTTCAGCAAACATTGTAGAAGTTGTGATAAATGTGTTGATGGCTTTGATCACCATTGCCGGTGGCTCAATAACTGTGTGGGGCAGAAAAACTATATTACCTTTATTTCTCTTATGGCAGTAAGTCTTGTTTGGCTTATTGTTGAAGCTGGAGTGGGTATTGCGGTTTTTGTGCGTTGTTTTGTTAATAAAAAAGGCATGGAAACTGAAATTATTGATCGACTTGGAAATGGCTTTTCTCGTGCCCCCTTTGCCACAGTTGTGGCGTTATGCACTGTAGTTTCCATGCTAGCCTGTATCCCACTGGGCGAACTGTTCTTCTTCCACATGATATTAATAAAAAAGGGGATTACAACCTATGAATTTGTTGTTGCGATGAGGGCTACGAGTGAGGCACCTGCAGGAGCTTCTGTTGACGAAGAATTGCCAAATATAATATACTCTCCATCTGGTTCTGCTACCACTGGTTTGAGTGGCGGAAGTTCTCTTGGTTTACAATACAAGGGGGCATGGTGTACACCTCCAAGAGTTTTTATTGATTATCAGGATGAAGTGGTGCCTCACCTGGAGCCAGGAATGGTCCCATCTACTGTTGATCCAGATGCAGTTGGAGCTTCTGAAAGAGGGTCAAAAGTGCCCAAACGAGCTGTTCGTCTCAGTGCTTGGAAGCTTGCAAAGCTGGACTCAAATGAGGCCATGAAGGCAGCAGCCAAAGCTAGAGCATCATCATCTGTTCTGAGGCCTCTTGATAACCGCCGTTTCCAAGATCCTGAATTGAGCTCCAGCGGAAATGTAAGCGTTAGAAGCAGTGTGAGTATTGACACTGGTGTAAATAAAGAGATCAAGCATGATCTTAGGCTCTCTCCCTTAAGAAACTCTTTGGCTCCTGGTCAAGCTAGTCCCGATGATTACGAAACCGGAACGCAGAGCATGAGTAGCTTCAGTAGTCCAAGCCATGTGCATGAAACAGTCACTCTCAGTCCTCTCCCACATGGTAACGGTCTGGGTCGTTTTACCGCTGCATCATCACTTCCTGTTCCTGAACATCCGTATTCTTCCAAGGCATCCTACCCTATCGCCACTGACCCCAGATTGCATACTTCTGGGCTTGATGATAAGGTTGCTCGGAGGGGAGGCATTACTGATCCATCGCTTCTTTCAGCTCCAGCCACTTCTTTTCTCAGAGACGTCAGAAAGACATCTGTTGTGTGGGATCAAGAAGCCGGGAGGTATGTCTCAGTTCCTGTATCAGCTTCAGAAACTCGTCCTCCTAGATCGTCTGTGCAGATAGGTTTGCCGAGTTTAAATGCTGAAACAAGCAACAATGCCCGAAAGCCAGTTGTTCCATTGCAACCCACATCATCTTCCAACACAAAAGCTCCATTGCAGCAATCAGACAAGTTAATGTACACAGGAGATTCCATTTTCTTTGGTGGTCCTCTGCTGAATATCCCTTCCCGAGACGGTTTGAGAAGCGATAGGGTTTCCACCTCGAGAGAAAGCCAAGAAAGAATGACAACAAACCTAACTCGGGAATCAAGATTCAAAAGGGATTCAGCTTCAAACCAACTTCCTGTTTTTGTCCCCGGTGGTTACGATCATAACCGTCCATCCGCTTCTCGTTTAAGGTAG 2205 44.9 MVRKHGWQLPAHTFQVVAITVFCLLVVAFYAFFAPFLGGHIWEYILIGVYSPVALLVFILYVRCTAINPADPGIMFKFDNRKTNPNNNQGLSLKSLPQNLDEMVNSRHSSASSASRSSISGPNMSRNGSVGDIGRVDNPMEQPTVRSADNIALVCCALFVHEDCRKRDGTADPLSAAEDALFCTLCNAEVREFSKHCRSCDKCVDGFDHHCRWLNNCVGQKNYITFISLMAVSLVWLIVEAGVGIAVFVRCFVNKKGMETEIIDRLGNGFSRAPFATVVALCTVVSMLACIPLGELFFFHMILIKKGITTYEFVVAMRATSEAPAGASVDEELPNIIYSPSGSATTGLSGGSSLGLQYKGAWCTPPRVFIDYQDEVVPHLEPGMVPSTVDPDAVGASERGSKVPKRAVRLSAWKLAKLDSNEAMKAAAKARASSSVLRPLDNRRFQDPELSSSGNVSVRSSVSIDTGVNKEIKHDLRLSPLRNSLAPGQASPDDYETGTQSMSSFSSPSHVHETVTLSPLPHGNGLGRFTAASSLPVPEHPYSSKASYPIATDPRLHTSGLDDKVARRGGITDPSLLSAPATSFLRDVRKTSVVWDQEAGRYVSVPVSASETRPPRSSVQIGLPSLNAETSNNARKPVVPLQPTSSSNTKAPLQQSDKLMYTGDSIFFGGPLLNIPSRDGLRSDRVSTSRESQERMTTNLTRESRFKRDSASNQLPVFVPGGYDHNRPSASRLR 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3181789 3188006 + Cp4.1LG01g01220.1 Cpe01g00552 461865

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00552 734 Pfam DHHC palmitoyltransferase 180 315 IPR001594 GO:0016409
Cpe01g00552 734 MobiDBLite consensus disorder prediction 110 127 - -
Cpe01g00552 734 MobiDBLite consensus disorder prediction 683 709 - -
Cpe01g00552 734 MobiDBLite consensus disorder prediction 678 734 - -
Cpe01g00552 734 MobiDBLite consensus disorder prediction 606 652 - -
Cpe01g00552 734 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 9 537 - -
Cpe01g00552 734 MobiDBLite consensus disorder prediction 479 523 - -
Cpe01g00552 734 ProSiteProfiles DHHC domain profile. 181 231 - -
Cpe01g00552 734 MobiDBLite consensus disorder prediction 610 652 - -
Cpe01g00552 734 MobiDBLite consensus disorder prediction 110 133 - -
Cpe01g00552 734 PANTHER PROTEIN S-ACYLTRANSFERASE 19-RELATED 9 537 - -
Cpe01g00552 734 MobiDBLite consensus disorder prediction 493 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00552 K20027 ZDHHC1_11; palmitoyltransferase ZDHHC1/11 [EC:2.3.1.225] - csv:101211028 1274.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00552 Cpe14g00415 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00552 Cpe-Chr1:3181789 Cpe01g01490 Cpe-Chr1:8893237 2.47E-90 dispersed
Cpe01g00552 Cpe-Chr1:3181789 Cpe14g00415 Cpe-Chr14:2600375 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1058 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00658 Cmo16g00535 . . . . Cpe14g00415 Cpe01g00552 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005383 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00552 Cpe_Chr01 FPKM 31.491171 33.758492 6.075299 6.048806 12.826414 10.757798 11.724382 7.891005 8.766632 8.566765