Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00553 ATGGCCTTCAATCATCTCCTTCGTTCTACTCTTAGGTCTCAGTTTGGTAGCTTTACAAAAGCCGTCACTGCTTCTAGTAGAGCTTCACAGGAACATGGCATCCTAGCTCCCTGTCTGTCCCGCTTCTACGGTACAGGGGCTTCAGTTCAAAAAGATGATCCAGGGTTTAAGGGGCATGATATGCTTGCACCTTTCACTGCAGGATGGCAGACCACTGATGTTCATCCACTAATCATAGATAAATCCGAGGGCTCATATGTATATGACATTGATGGAAAGAAGTACCTTGACTCTCTTGCCGGTCTATGGTGCACATCCTTAGGGGGAAACGAACCACGACTTGTGGCAGCTGCTACTGCACAATTGAATACCTTGCCATTTTACCACTCCTTTTGGAATCGTACAACGAGGCCTTCTTTGGATCTGGCAAAGGAACTCCTTGAAATGTTTACTGCTAGGAAAATGGGGAAAGTATTTTTTGTTAACAGTGGTTCAGAGGCCAATGATACTCAGGTCAAGCTGGTATGGTACTATAACAATGCACTTGGAAGACCGAATAAGAAGAAGTTCATTGCTCGCTCAAAAGCGTACCATGGCTCAACATTAATATCAGCCAGTGAGACAGAGGAAGAGTTCTCAACCAGATTAGCCAAAAACTTAGAAGACCTTATACTCAAGGAGGGACCAGAGACGATTGCTGCGTTCATCGCTGAACCTGTCATGGGAGCTGGTGGTGTGATTCCTCCACCTGCTACTTATTTTGAAAAGATCCAAGCTGTGGTCAAGAAGGAAAGGAATATTGTGGATAAAGTAAATAGCATTTCCTCAAGGTTTCAAGATGGCCTTAAAGCTTTCTCTGACAGCCCTATCGTTGGAGAGATACGAGGGACTGGCTTGATCTTGGGCACAGAGTTTGTAGACAATAAATCACCAAATGATCCCTTCCCTCCTGAATGGGGAGTCGGTGCATACTTCGGAGCCGAATGTCAGAAAAATGGTATGCTTGTACGTGTTGCAGGGGATACTATAATGATGTCTCCACCATTTATCATCTCTCCTCAAGAAGTTGATGAGTTAATCAGCATCTATGGGAATGCACTAAAGGCTACTGAAGAGAGAGTGAAGGAGCTGAAGGCTCAGAGGTAG 1146 44.85 MAFNHLLRSTLRSQFGSFTKAVTASSRASQEHGILAPCLSRFYGTGASVQKDDPGFKGHDMLAPFTAGWQTTDVHPLIIDKSEGSYVYDIDGKKYLDSLAGLWCTSLGGNEPRLVAAATAQLNTLPFYHSFWNRTTRPSLDLAKELLEMFTARKMGKVFFVNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKAYHGSTLISASETEEEFSTRLAKNLEDLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVVKKERNIVDKVNSISSRFQDGLKAFSDSPIVGEIRGTGLILGTEFVDNKSPNDPFPPEWGVGAYFGAECQKNGMLVRVAGDTIMMSPPFIISPQEVDELISIYGNALKATEERVKELKAQR 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3189085 3195393 + Cp4.1LG01g01240.1 Cpe01g00553 461866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00553 381 Gene3D - 207 260 IPR015421 GO:0003824
Cpe01g00553 381 Coils Coil 360 381 - -
Cpe01g00553 381 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 262 377 - -
Cpe01g00553 381 SUPERFAMILY PLP-dependent transferases 65 368 IPR015424 -
Cpe01g00553 381 Pfam Aminotransferase class-III 75 210 IPR005814 GO:0008483|GO:0030170
Cpe01g00553 381 Pfam Aminotransferase class-III 263 364 IPR005814 GO:0008483|GO:0030170
Cpe01g00553 381 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 262 377 - -
Cpe01g00553 381 Gene3D - 114 206 IPR015421 GO:0003824
Cpe01g00553 381 Gene3D Aspartate Aminotransferase, domain 1 261 381 IPR015422 GO:0003824
Cpe01g00553 381 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 10 208 - -
Cpe01g00553 381 PANTHER ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE 206 263 - -
Cpe01g00553 381 Gene3D Aspartate Aminotransferase, domain 1 61 113 IPR015422 GO:0003824
Cpe01g00553 381 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 10 208 - -
Cpe01g00553 381 PANTHER GAMMA AMINOBUTYRATE TRANSAMINASE 1, MITOCHONDRIAL 206 263 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00553 K16871 POP2; 4-aminobutyrate---pyruvate transaminase [EC:2.6.1.96] - csv:101211530 456.062
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00553 Cpe-Chr1:3189085 Cpe02g00599 Cpe-Chr2:3585502 0 dispersed
Cpe01g00553 Cpe-Chr1:3189085 Cpe14g00413 Cpe-Chr14:2568392 2.01E-76 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1057 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g00659 Cmo16g00534 . . . . . Cpe01g00553 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000985 1 3 1 1 1 2 1 4 1 3 2 3 3 5 5 6 3 3 4 3 3 2 2 2 3 4 2 3 3 2 81
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00553 Cpe_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0