Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00556 ATGCTTCGAAGTTTAATCCCTCATTCCCCCATCAATTCCGCTTCCAATTCCATGTCGTCCAAGCGCCCCGCCGACGCCGACTCCTCCGCCGACGACCCTTCCTCCAAGCGTCTCAATTCCGGTCCCTCCAACTTCCACGCCGGCGCCTCCGGGGAGAAGGACGTCGAGGAGGAAGAAGAGCTTCCGCTTGTCGATGGCAGCGACTCCACTGGTTTGAGACTGCTAGGTCTTCTTCTTCAATGCGCTGAGTGCGTCGCTATGGATAATCTACAAGAGGCGAACGATCTCTTGCCGGAGATCTCGGAGCTCTCCTCGCCGTTTGGTACCTCACCTGAGCGCGTCGGCGCGTACTTCGCCCACGCGCTTCAGGCTAGAGTGATTAGCTCCTGCTTGGGAACCTACTCGCCCTTGTCGATTAGAACGCTGAATCAAACTCAGTCGCAGAGGATGTTTAATGCTCTGCAATCCTACAATTCGATTAGTCCCTTAATCAAGTTCTCTCACTTCACTGCTAATCAAGCCATTTTCCAAGCCTTGGACGGCGAAGATCGAGTCCACGTTATCGATCTCGACGTAATGCAAGGTCTTCAATGGCCTGGATTGTTCCACATCCTCGCCTCCCGCTCGAAGAAAATCCAATCCCTACGAATCTCCGGCTTCGGATCCTCTTCGGAATTGCTCCAATCCACCGGGCAGAGACTCGCCGATTTCGCAACCTCCCTCGGCCTCCCGTTCGAGTTCCATCCAGTGGAAGGCAAAATCGGAAACCTAACGGACCCAAAGCAACTGGAATTGAGGGCAGGCGAGGCGGTGGTAGTGCACTGGATGCACCATTGCTTGTACGACATAACCGGCAGCGATATAGGTACGCTGAGACTTCTTTCAACCCTAAAACCTAAACTGATCACCATTGTGGAACAGGATCTGAGCCATGGGGGCAGTTTTCTAGGAAGATTCGTAGAAGCTCTGCATTATTACAGCGCGTTATTCGACGCGCTGGGTGATAGTTTGGCGATGGATAGCGTGGAAAGGCATGTGGTGGAGCAGCAATTGTTGGGATGTGAGATTAGGAACATTATCGCCGTCGGTGGACCCAAAAGAACTGGAGAAGTGAAGGTGGAGAGATGGGGGGATGAACTGAAACGGGTCGGGTTCGGAGCCGTGTCTCTTGGGGGAAACCCAGCTGCTCAGGCCAGTCTGCTTCTGGGCATGTTCCCCTGGAAAGGGTACACTCTGGTTGAAGAAAATGGGTGCCTGAAACTCGGATGGAAGGACCTTTCCCTGCTCACAGCCTCTGCCTGGCAGCCCTGTGATTGA 1317 53.91 MLRSLIPHSPINSASNSMSSKRPADADSSADDPSSKRLNSGPSNFHAGASGEKDVEEEEELPLVDGSDSTGLRLLGLLLQCAECVAMDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLSIRTLNQTQSQRMFNALQSYNSISPLIKFSHFTANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRSKKIQSLRISGFGSSSELLQSTGQRLADFATSLGLPFEFHPVEGKIGNLTDPKQLELRAGEAVVVHWMHHCLYDITGSDIGTLRLLSTLKPKLITIVEQDLSHGGSFLGRFVEALHYYSALFDALGDSLAMDSVERHVVEQQLLGCEIRNIIAVGGPKRTGEVKVERWGDELKRVGFGAVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPCD 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3215741 3217057 - Cp4.1LG01g00980.1 Cpe01g00556 461869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00556 438 Pfam GRAS domain family 76 435 IPR005202 -
Cpe01g00556 438 MobiDBLite consensus disorder prediction 8 24 - -
Cpe01g00556 438 ProSiteProfiles GRAS family profile. 65 435 IPR005202 -
Cpe01g00556 438 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 43 435 IPR005202 -
Cpe01g00556 438 PANTHER SCARECROW-LIKE PROTEIN 23 43 435 - -
Cpe01g00556 438 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00556 Cpe-Chr1:3215741 Cpe10g01027 Cpe-Chr10:5952091 2.27E-159 dispersed
Cpe01g00556 Cpe-Chr1:3215741 Cpe19g00183 Cpe-Chr19:1489557 3.59E-161 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48762 PF03514 GRAS 6.90E-116 CL0063 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00556 - - bhj:120092974 745.347