Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00559 ATGCTATTCTCCGCAGCGGCGGCGCCCATTCTGAACGAGAAATATGAGGCGGCGGAGAACGGCCTGATGACGAGTGCGATATGCGCAGGACTCGCGGTGATGGCCGTAATCCTCTCCATCGGTCACATCTCCGGCGCTCACTTGAATCCCTCCGTCACTGTAGCCTTCGCCGCTCTCCGTCACTTTCCATGGCTTCACGTCCCGCTCTACATCACCGCTCAGATTTCCGGATCTATTTCCGCCGCTTTCAGCCTCAAGATCGTCTTCCGTCCGTTCATGTCCGGCGGCGCCACCGTTCCCTCCGTCGGCACCGGTCAGGCCCTCGCGATCGAGTTCATCGTCACATTCTTCCTCATGTTCGTCATTGTTGCTGTCGCCACTGATACCAGAGCGGTCGGGGAATTGGCCGGAATTGCAATCGGAGGCATGGTAATGCTCAACATTCTCGTCGCCGGGCGCGCAACCGGCGGTTCGATGAACCCGGCGAGGACCTTAGGCCCAGCCATCGCAACAGAAAATTTCAAAGGTCTATGGATATACATAGTAGCACCCACAGCCGGAGCAGTGGCTGGTGCAGCCGGCTACACAGCCGTGAAGCTCCGTCAAGACACGGCAGCGGAATCAGCGCGGCGAAATGAAGGAAGCCTCAGCCGATTGGGAGAAAGCTCGCAAGCGGTGGTCCCGTCGAGATCCAGTGGAAACTCGGCATGGAAGCTGGACGGCGGTTCGTGGCTGTGTTTAGCCGGAGAGTGCAGGAAGGAGTGCTCGGAATTGGAGCATCTGAATGTGATTCTGTGTTACAAGGAAGCTAATCAGATCGCAGAATTTCTGGGCAAGAACGAAGCAGGCGACGAGGGTTTGGTATAA 867 57.32 MLFSAAAAPILNEKYEAAENGLMTSAICAGLAVMAVILSIGHISGAHLNPSVTVAFAALRHFPWLHVPLYITAQISGSISAAFSLKIVFRPFMSGGATVPSVGTGQALAIEFIVTFFLMFVIVAVATDTRAVGELAGIAIGGMVMLNILVAGRATGGSMNPARTLGPAIATENFKGLWIYIVAPTAGAVAGAAGYTAVKLRQDTAAESARRNEGSLSRLGESSQAVVPSRSSGNSAWKLDGGSWLCLAGECRKECSELEHLNVILCYKEANQIAEFLGKNEAGDEGLV 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3240447 3241783 - Cp4.1LG01g01000.1 Cpe01g00559 461872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00559 288 PANTHER AQUAPORIN NIP2-1 2 207 IPR034294 -
Cpe01g00559 288 Pfam Major intrinsic protein 11 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g00559 288 ProSitePatterns MIP family signature. 47 55 IPR022357 -
Cpe01g00559 288 Gene3D Glycerol uptake facilitator protein. 1 213 IPR023271 -
Cpe01g00559 288 PANTHER AQUAPORIN NIP5-1 ISOFORM X1-RELATED 2 207 - -
Cpe01g00559 288 SUPERFAMILY Aquaporin-like 13 201 IPR023271 -
Cpe01g00559 288 MobiDBLite consensus disorder prediction 209 234 - -
Cpe01g00559 288 PRINTS Major intrinsic protein family signature 29 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g00559 288 PRINTS Major intrinsic protein family signature 66 85 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g00559 288 PRINTS Major intrinsic protein family signature 110 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g00559 288 PRINTS Major intrinsic protein family signature 178 198 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cpe01g00559 288 PRINTS Major intrinsic protein family signature 141 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00559 Cpe-Chr1:3240447 Cpe19g01089 Cpe-Chr19:7398581 9.79E-63 dispersed
Cpe01g00559 Cpe-Chr1:3240447 Cpe10g00126 Cpe-Chr10:808572 2.91E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00559 K09874 - dcr:108227578 285.419