Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00579 ATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACTGAGTCAGAAGCGGCGAAATGGCCCCCCTCTCGGTCTCAGAAACCTAGGCAATACCTGCTACCTCAACAGCGTCCTTCAGTGCCTCACTTACACCCCTCCCCTTGCCAATTTCTGCCTTCGAAACCAGCACTCTTCTCTATGCGATTCTGCTTCCTCCAACGCGGAGAGAAAGCGTGAATGTCCGTTTTGTATTCTGGAAAGGCGTATAGTGAGGTCTTTGAGCTTGGATCTCACCTTGGACTCGCCTCTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCACTTTCGCTTGGGCCGCCAGGAGGACGCCCACGAGTTCCTTCGTTATGTCATCGATGCTTGCCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAACTGGCGGAGGTGCGAGTGGAAGCTCCACGGTGGTGAAGGAGATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAGTTTTAGATGGCAGTAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTGGTGGCGAGGAAGCAGATGTCTATACTTCAAGCACCGAATACTCTTGTCGTCCAATTGAAGAGATTTGAAGGCATATTTGGTGGTAAGATTGACAAGGCCATTGCGTATGAGGAGAGTTTACAACTTTCAAATTTTATGTGCAAAGGAAGTCAGGATCCACGTCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCCTTTCTGCAGAATCTGGGCACTATTATGCATATATCAAGGATGCATCGGGTAGATGGTATTGCTGCAACGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTCTTGTCAGAGAAGGTGTATATTCTCTTTTTCTCTCGTACGAACCAAAGGCCAGTAACTGCAAACGCAGCTCTTGGTTCAAATGGTGTAAAATCTCATGAAGGTAATGGCATTGAAGCATCCAAAATCTCAAAACCTTCTGCGGTAACTAAAACAGCACAGACAAAATCCCATGTTGAGCAATCTTCTCGGAAAGAACTTTCAAGTCTATCTAAGGTAGAAAAACCAACTTTCAGTCAGCGAGGAAAATCTTATATGAATGGACATTCTAATTCTGTACGAGCTCCTTCCACCATTAACGGGAAGATAGTTCTTGAGAAGGATCAATCCATCAAGGAGAACGAGAAAGAAAATGTAAACTCGTTGCATTTGGAAAATGGTGTGAGACATAAATCTTTTCTTGGGAATGGAAATAGCAAGAAAAGTAATGAAGTTGCTGATGATGTCACTGAGAGGGAACGTAAATCTGTGTTAATGAATGGTAATGGTAATGGCGAGAGTGTGGCAATGAAAGAAGATAAATACGATCAGTGTGATGGTAATCCTATGAATAACAAGTTCACTGCAGGAAATGGGTCTGGTCATGAAGAAGTGGATAATGCAGTCAACTGCTCCTCTGAGATCAAAATGGCAAAAAGAAAATCAGACCTCTGTATCTTGTTTCAACAGGATGCTCTATCTCGAAAAAGAGTTGAAGAACTGACAGAAGAGAAATTGCTGATTGCAGATGCCAAGCAAAAGTTTATTTCACGGATACCAGAAGTTCTAAAAGAGGACCTTATAAAAAAGCTTCAAGTATTTAGTCAAGAAAAGTAA 1782 43.32 MALQLQMSWQPSLLSQKRRNGPPLGLRNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSNAERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRTGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKVDEIMDISLDVLHSSSLKEALQKFFQLEVLDGSNKYKCDNCKKLVVARKQMSILQAPNTLVVQLKRFEGIFGGKIDKAIAYEESLQLSNFMCKGSQDPRPEYKLFGTIVHSGLSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTANAALGSNGVKSHEGNGIEASKISKPSAVTKTAQTKSHVEQSSRKELSSLSKVEKPTFSQRGKSYMNGHSNSVRAPSTINGKIVLEKDQSIKENEKENVNSLHLENGVRHKSFLGNGNSKKSNEVADDVTERERKSVLMNGNGNGESVAMKEDKYDQCDGNPMNNKFTAGNGSGHEEVDNAVNCSSEIKMAKRKSDLCILFQQDALSRKRVEELTEEKLLIADAKQKFISRIPEVLKEDLIKKLQVFSQEK 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3340407 3351479 - Cp4.1LG01g00830.1 Cpe01g00579 461892

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00579 593 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 278 296 IPR018200 GO:0004843|GO:0006511
Cpe01g00579 593 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Cpe01g00579 593 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 15 343 - -
Cpe01g00579 593 CDD Peptidase_C19E 23 334 - -
Cpe01g00579 593 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 343 - -
Cpe01g00579 593 MobiDBLite consensus disorder prediction 368 397 - -
Cpe01g00579 593 Pfam Ubiquitin carboxyl-terminal hydrolase 25 333 IPR001394 GO:0004843|GO:0016579
Cpe01g00579 593 Gene3D Cysteine proteinases 18 338 - -
Cpe01g00579 593 SUPERFAMILY Cysteine proteinases 17 335 IPR038765 -
Cpe01g00579 593 MobiDBLite consensus disorder prediction 452 472 - -
Cpe01g00579 593 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 336 IPR028889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00579 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101218797 990.719
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00579 Cpe02g00634 CCT
Cpe01g00579 Cpe14g00389 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00579 Cpe-Chr1:3340407 Cpe07g00164 Cpe-Chr7:972471 2.38E-65 dispersed
Cpe12g00631 Cpe-Chr12:6197448 Cpe01g00579 Cpe-Chr1:3340407 5.47E-10 dispersed
Cpe17g00510 Cpe-Chr17:4284550 Cpe01g00579 Cpe-Chr1:3340407 1.14E-10 dispersed
Cpe07g00714 Cpe-Chr7:6014731 Cpe01g00579 Cpe-Chr1:3340407 1.15E-65 transposed
Cpe11g01046 Cpe-Chr11:8768403 Cpe01g00579 Cpe-Chr1:3340407 5.95E-33 transposed
Cpe20g00646 Cpe-Chr20:4092507 Cpe01g00579 Cpe-Chr1:3340407 7.00E-14 transposed
Cpe01g00579 Cpe-Chr1:3340407 Cpe14g00389 Cpe-Chr14:2397539 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00579 Cpe_Chr01 FPKM 43.990673 45.636662 25.239424 26.516726 26.953594 25.742161 27.850163 20.905552 21.288052 21.125769