Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00579 ATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACTGAGTCAGAAGCGGCGAAATGGCCCCCCTCTCGGTCTCAGAAACCTAGGCAATACCTGCTACCTCAACAGCGTCCTTCAGTGCCTCACTTACACCCCTCCCCTTGCCAATTTCTGCCTTCGAAACCAGCACTCTTCTCTATGCGATTCTGCTTCCTCCAACGCGGAGAGAAAGCGTGAATGTCCGTTTTGTATTCTGGAAAGGCGTATAGTGAGGTCTTTGAGCTTGGATCTCACCTTGGACTCGCCTCTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCACTTTCGCTTGGGCCGCCAGGAGGACGCCCACGAGTTCCTTCGTTATGTCATCGATGCTTGCCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAACTGGCGGAGGTGCGAGTGGAAGCTCCACGGTGGTGAAGGAGATTTTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAGTTTTAGATGGCAGTAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTGGTGGCGAGGAAGCAGATGTCTATACTTCAAGCACCGAATACTCTTGTCGTCCAATTGAAGAGATTTGAAGGCATATTTGGTGGTAAGATTGACAAGGCCATTGCGTATGAGGAGAGTTTACAACTTTCAAATTTTATGTGCAAAGGAAGTCAGGATCCACGTCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCCTTTCTGCAGAATCTGGGCACTATTATGCATATATCAAGGATGCATCGGGTAGATGGTATTGCTGCAACGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTCTTGTCAGAGAAGGTGTATATTCTCTTTTTCTCTCGTACGAACCAAAGGCCAGTAACTGCAAACGCAGCTCTTGGTTCAAATGGTGTAAAATCTCATGAAGGTAATGGCATTGAAGCATCCAAAATCTCAAAACCTTCTGCGGTAACTAAAACAGCACAGACAAAATCCCATGTTGAGCAATCTTCTCGGAAAGAACTTTCAAGTCTATCTAAGGTAGAAAAACCAACTTTCAGTCAGCGAGGAAAATCTTATATGAATGGACATTCTAATTCTGTACGAGCTCCTTCCACCATTAACGGGAAGATAGTTCTTGAGAAGGATCAATCCATCAAGGAGAACGAGAAAGAAAATGTAAACTCGTTGCATTTGGAAAATGGTGTGAGACATAAATCTTTTCTTGGGAATGGAAATAGCAAGAAAAGTAATGAAGTTGCTGATGATGTCACTGAGAGGGAACGTAAATCTGTGTTAATGAATGGTAATGGTAATGGCGAGAGTGTGGCAATGAAAGAAGATAAATACGATCAGTGTGATGGTAATCCTATGAATAACAAGTTCACTGCAGGAAATGGGTCTGGTCATGAAGAAGTGGATAATGCAGTCAACTGCTCCTCTGAGATCAAAATGGCAAAAAGAAAATCAGACCTCTGTATCTTGTTTCAACAGGATGCTCTATCTCGAAAAAGAGTTGAAGAACTGACAGAAGAGAAATTGCTGATTGCAGATGCCAAGCAAAAGTTTATTTCACGGATACCAGAAGTTCTAAAAGAGGACCTTATAAAAAAGCTTCAAGTATTTAGTCAAGAAAAGTAA 1782 43.32 MALQLQMSWQPSLLSQKRRNGPPLGLRNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSNAERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRTGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKVDEIMDISLDVLHSSSLKEALQKFFQLEVLDGSNKYKCDNCKKLVVARKQMSILQAPNTLVVQLKRFEGIFGGKIDKAIAYEESLQLSNFMCKGSQDPRPEYKLFGTIVHSGLSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTANAALGSNGVKSHEGNGIEASKISKPSAVTKTAQTKSHVEQSSRKELSSLSKVEKPTFSQRGKSYMNGHSNSVRAPSTINGKIVLEKDQSIKENEKENVNSLHLENGVRHKSFLGNGNSKKSNEVADDVTERERKSVLMNGNGNGESVAMKEDKYDQCDGNPMNNKFTAGNGSGHEEVDNAVNCSSEIKMAKRKSDLCILFQQDALSRKRVEELTEEKLLIADAKQKFISRIPEVLKEDLIKKLQVFSQEK 593
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3340407 3351479 - Cp4.1LG01g00830.1 Cpe01g00579 461892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00579 593 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 278 296 IPR018200 GO:0004843|GO:0006511
Cpe01g00579 593 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Cpe01g00579 593 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 15 343 - -
Cpe01g00579 593 CDD Peptidase_C19E 23 334 - -
Cpe01g00579 593 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 343 - -
Cpe01g00579 593 MobiDBLite consensus disorder prediction 368 397 - -
Cpe01g00579 593 Pfam Ubiquitin carboxyl-terminal hydrolase 25 333 IPR001394 GO:0004843|GO:0016579
Cpe01g00579 593 Gene3D Cysteine proteinases 18 338 - -
Cpe01g00579 593 SUPERFAMILY Cysteine proteinases 17 335 IPR038765 -
Cpe01g00579 593 MobiDBLite consensus disorder prediction 452 472 - -
Cpe01g00579 593 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 336 IPR028889 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00579 Cpe02g00634 CCT
Cpe01g00579 Cpe14g00389 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00579 Cpe-Chr1:3340407 Cpe07g00164 Cpe-Chr7:972471 2.38E-65 dispersed
Cpe12g00631 Cpe-Chr12:6197448 Cpe01g00579 Cpe-Chr1:3340407 5.47E-10 dispersed
Cpe17g00510 Cpe-Chr17:4284550 Cpe01g00579 Cpe-Chr1:3340407 1.14E-10 dispersed
Cpe07g00714 Cpe-Chr7:6014731 Cpe01g00579 Cpe-Chr1:3340407 1.15E-65 transposed
Cpe11g01046 Cpe-Chr11:8768403 Cpe01g00579 Cpe-Chr1:3340407 5.95E-33 transposed
Cpe20g00646 Cpe-Chr20:4092507 Cpe01g00579 Cpe-Chr1:3340407 7.00E-14 transposed
Cpe01g00579 Cpe-Chr1:3340407 Cpe14g00389 Cpe-Chr14:2397539 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00579 K11855 - csv:101218797 990.719