Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00585 ATGGTGGTTTTGTCTAAGCCAGCTATCAAACAGATGGCTTCTTCCTACATGAGAAACTCTATGGCTGCTGCTGGTTCTTCCTCTGCTGCATTTTTCTCTGGGGTTCCGTTGATTGACCTTTCTGCACCGGATGCTAAGCATCTTATCGTCAAGGCCTGTGAAGAGCTTGGATTTTTCAAGGTCGTTAACCATGGCGTTCCCATGGAATTCATCTCCACTCTTGAATCAGAATCCACCAAATTCTTCTCTCTTCCCCTTTCTGAAAAACAGAGGGCCGGCCCCCCTTCTCCTTTTGGCTATGGCAATAAACAAATTGGCCGCAATGGCGACGTGGGCTGGGTTGAATATCTCCTCTTGAATACGCACCTTGAGTCCAACTCTGATGGGTTCCTCTCCATTTTTGGCCAAGACCCACAAAAGCTCCGCTCTGCGGTGAACGATTACATCTCGGCTGTGAGAAACATGGCGTGTGAAATCCTTGAACTAATGGCGGAAGGGTTGAAGATTCAGCAGAGGAATGCGTTCAGCAAGCTGTTGATGGATGAAGAGAGCGACTCTGTTTTCAGGGTGAACCATTACCCGCCATGTCCAGAGCTTCAAGCTTTGAAAGGGACAAACATGATTGGATTTGGAGAACACACAGACCCACAGATCATTTCAGTTTTGAGATCGAATAACACTTCAGGACTTCAAATATCTCTTGCTGATGGGAATTGGATTTCCGTTCCTCCCGATCAAAGCTCCTTCTTCATCAACGTAGGTGACTCTTTACAGGTGATGACGAATGGAAGATTCAAAAGCGTGAAGCACAGAGTATTGACGAACAGGTTGAAGTCAAGAGTTTCAATGATATACTTCGGGGGGCCGCCGTTGAGTGAAAAGATAGCGCCGTTGCCTTCGCTCATGAAAGGAGAAGAAAGTTTGTACAAAGAGTTCACTTGGTTTGAGTACAAAAGATCAGCTTACAACTCCAGGTTGGCAGATAACAGGCTTGTGCACTTTGAGAGAATTGCAGCCTCATGA 1023 46.33 MVVLSKPAIKQMASSYMRNSMAAAGSSSAAFFSGVPLIDLSAPDAKHLIVKACEELGFFKVVNHGVPMEFISTLESESTKFFSLPLSEKQRAGPPSPFGYGNKQIGRNGDVGWVEYLLLNTHLESNSDGFLSIFGQDPQKLRSAVNDYISAVRNMACEILELMAEGLKIQQRNAFSKLLMDEESDSVFRVNHYPPCPELQALKGTNMIGFGEHTDPQIISVLRSNNTSGLQISLADGNWISVPPDQSSFFINVGDSLQVMTNGRFKSVKHRVLTNRLKSRVSMIYFGGPPLSEKIAPLPSLMKGEESLYKEFTWFEYKRSAYNSRLADNRLVHFERIAAS 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3388963 3390723 - Cp4.1LG01g00820.1 Cpe01g00585 461898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00585 340 PANTHER GIBBERELLIN 2-OXIDASE 25 337 - -
Cpe01g00585 340 Pfam non-haem dioxygenase in morphine synthesis N-terminal 35 126 IPR026992 -
Cpe01g00585 340 PRINTS Isopenicillin N synthase signature 49 66 - -
Cpe01g00585 340 PRINTS Isopenicillin N synthase signature 213 234 - -
Cpe01g00585 340 PRINTS Isopenicillin N synthase signature 249 275 - -
Cpe01g00585 340 Gene3D - 2 328 IPR027443 -
Cpe01g00585 340 Pfam 2OG-Fe(II) oxygenase superfamily 185 287 IPR044861 -
Cpe01g00585 340 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 183 289 IPR005123 -
Cpe01g00585 340 SUPERFAMILY Clavaminate synthase-like 14 328 - -
Cpe01g00585 340 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 25 337 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00585 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - csv:101215820 598.971
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00585 Cpe-Chr1:3388963 Cpe20g00518 Cpe-Chr20:3018931 5.94E-158 dispersed
Cpe01g00585 Cpe-Chr1:3388963 Cpe14g00383 Cpe-Chr14:2348256 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g897 . . . . . . . . . Cmo04g00699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00649 . Car04g00603 . . Cpe01g00585 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00585 Cpe_Chr01 FPKM 8.9375 9.869723 7.129994 7.168391 9.922018 9.32588 10.263138 9.940618 9.856082 11.029211