Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00589 ATGATGTCTGTCATATGCCAGAGCCTTGATTTTGGAAGGTATGTTTTGGATCATGTTGCTTGTGGCTGTTCTTCCAATACTCCATTGGATCGATGTGCGGTGAGGAGTTATGTTAAACCGTGTTCTAAGGGTAGAAACACGCGACACCAAACTCGAACTTTGATTTGTTCCCGAAGAAACATTGGGCAGTGCAGAGTGTTTTCAACTACCCAACCGGAAACTGTATTGAATAGCATTACTGGTGGTTCTCAACCATTCTTGGAACTGAGGAAGGAGCCCAGAACCCCAATCTCGTCGTCAAATTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTTCTGTCTATGGTTGGTGAGGAGAACCCAGCTTTGGTATCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTAGTATTCCTGGTGTCAAGAGCAACGGCCGGATTAGTTGGGTTAGAGGAACTCACTGTGGAGCATCGACGTTTGGCAGAGATCATTGAAATGATCCACACTGCAAGCTTGATACACGACGATGTATTAGACGATAGCGATATGAGAAGAGGGAAGGAAACCTTGCACCAATTATACGGTACCAGAGTGGCAGTGCTTGCTGGAGATTTCATGTTTGCACAGTCATCATGGTGTCTTGCTAACCTCGAAAATCTCGAAGTCATTAAGCTTATCAGTCAGGTTATTAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCAAGCCTGTTTGATTGTGAAGTTGAACTTGAAGAGTATCTGACCAAAAGCTATTATAAAACAGCCTCCTTGATTGCTGCTAGCACGAAAGGTGCTGCGATCTTTAGCGGGGTTGATCGTGATACTACTGAGAAGATGTACGAGTATGGAAGGAATCTCGGTCTTTCGTTCCAAATTGTCGACGACATATTGGACTTTACGCAATCGACAAAGCAGCTCGGAAAGCCAGCAGGAAGTGATCTGGCTAAAGGAAATCTTACAGCTCCAGTTATATTTGCTCTTGAGAGAGAGCCTAGACTGAAAGAAATTATCGAAACCGAATTCAGTGAGCCGGGGTCGCTAGAAGAAGCGATCAAATTAGTCAAGAGCAGGGGTGGCATTGAAAGAGCACAGGAATTGGCTAAACAGAAGGCAGATCTTGCTATCCAAAACCTACAATGCCTTCCAGAAGGAGTGTTTCGGTACGCGCTCGAGGATATGGTGACGTTTAATCTAGAACGGATCGATTAG 1266 44.79 MMSVICQSLDFGRYVLDHVACGCSSNTPLDRCAVRSYVKPCSKGRNTRHQTRTLICSRRNIGQCRVFSTTQPETVLNSITGGSQPFLELRKEPRTPISSSNLFEVVADDLQKLNQNLLSMVGEENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRRLAEIIEMIHTASLIHDDVLDDSDMRRGKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCEVELEEYLTKSYYKTASLIAASTKGAAIFSGVDRDTTEKMYEYGRNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALEREPRLKEIIETEFSEPGSLEEAIKLVKSRGGIERAQELAKQKADLAIQNLQCLPEGVFRYALEDMVTFNLERID 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3404293 3408670 - Cp4.1LG01g00590.1 Cpe01g00589 461902

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00589 421 Pfam Polyprenyl synthetase 128 372 IPR000092 GO:0008299
Cpe01g00589 421 SUPERFAMILY Terpenoid synthases 100 419 IPR008949 -
Cpe01g00589 421 ProSitePatterns Polyprenyl synthases signature 1. 183 197 IPR033749 -
Cpe01g00589 421 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 2 421 - -
Cpe01g00589 421 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2 421 - -
Cpe01g00589 421 CDD Trans_IPPS_HT 123 419 IPR000092 GO:0008299
Cpe01g00589 421 ProSitePatterns Polyprenyl synthases signature 2. 305 317 IPR033749 -
Cpe01g00589 421 Gene3D Farnesyl Diphosphate Synthase 97 420 IPR008949 -
Cpe01g00589 421 SFLD Isoprenoid Synthase Type I 129 416 - -
Cpe01g00589 421 TIGRFAM prenyl_cyano: solanesyl diphosphate synthase 97 420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00589 K05356 SPS, sds; all-trans-nonaprenyl-diphosphate synthase [EC:2.5.1.84 2.5.1.85] - csv:101214140 737.258
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00589 Cpe-Chr1:3404293 Cpe10g00070 Cpe-Chr10:507007 5.18E-80 dispersed
Cpe01g00589 Cpe-Chr1:3404293 Cpe14g00376 Cpe-Chr14:2303408 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
Vvi19g848 . . . . . . . . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00972 Blo10g00714 Bda05g00818 Bda12g00808 . . . . . . . Cma04g00653 . . . . Cpe01g00589 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00589 Cpe_Chr01 FPKM 40.845287 48.705128 60.134331 61.087215 29.838879 23.254253 34.594975 48.225605 53.095795 58.5182