Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00592 ATGGCTACACATTCTCCTAAGAACATCCTCATTACTGGGGCTGCTGGATTTATTGCATCCCATGTTGCTAACAGGCTTGTCAGAAACTATCCTGGCTACAAAATTGTTGTACTTGACAAACTTGATTACTGCTCGAATCTGAAGAATCTTCTTCCTTCTAAGCCATCTCCCAATTTCAAATTTGTTAAGGGGGACATTGGCAGTGCTGATCTTGTCAATTATCTCCTGATTACTGAGTCCATTGATACGATTATGCATTTTGCTGCTCAGACTCATGTTGACAACTCGTTCGGTAATAGTTTCGAGTTCACGAAGAATAATATCTATGGCACACATGTTCTTTTAGAAGCGTGCAAGGTCACTGGTCAGATCCGGAGGTTCATCCATGTTAGTACGGATGAAGTATATGGAGAGACAGATGAGGATGCTGTTGTGGGAAACCATGAGGCTTCCCAACTCCTCCCAACAAATCCATACTCTGCAACAAAAGCTGGAGCTGAAATGCTTGTGATGGCCTATGGTAGGTCGTATGGGTTACCTGTGATCACGACGCGAGGAAACAATGTCTATGGACCTAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTTTTGGCCATGAGAGGTCAGCCTCTTCCAATTCATGGGGATGGTTCTAATGTTAGGAGTTATCTCTACTGTGAGGATGTTGCTGAGGCTTTTGAAGTCATTCTTCACAAAGGAGAGGTTGGCCATGTTTACAACGTTGGGACAAAGAAGGAGAGAAGGGTTATAGATGTTGCCGAGGATATATGTAGACTTTTCTCAAGGGACGCAAAGGCAAGCATCAAGTATGTAGACAATAGACCATTTAATGATCAGAGGTATTTCTTGGACGATGAAAAACTCAAGAACTTGGGGTGGTCGGAACGTACAACGTGGGAAGACGGGCTGAAGAAGACAATTGAATGGTACACCAAGAACCCTGATTGGTGGGGTGATGTCTCTGGGGCTCTGCTGCCACATCCTAGAATGCTAATGATGCCTGGTGGTGTTGAGAGGCACTTTGAAGGTTCTGAAGAGGGAAAACCAGCTTCTTATGCTTCCTGTAATACTAAAATGGTAGTCCCAACTTCCAGGAATCCGGGCTCTCCTTACCAGCCATCCTTGAAGTTTTTGCTCTATGACGTTTGCCGGGAGCACGGACTCTTGATGATCAACTTTGCGACTGGCTGTATATTCGAGTACGATGCCAAACATCCAGAGGGTTCTGGCATTGGTTTTAAAGAGGAAGACAAGCCAAATTTCATTGGTTCCTTTTATTCGAAAACCAAGGCCATGGTGGAGGAGCTTCTGAACGAATACGATAACGTCTGCACACTCCGAGTTCGAATGCCGATATCATCCGACTTGAACAACCCACGCAACTTCATTACCAAGATTTCTCGCTACAATAAGGTGGTTAACATCCCAAACAGCATGACCATCCTGGATGAACTTCTGCCCATTTCGATAGAGATGGCGAAGCGTAACTTGAAGGGCATCTGGAACTTCACAAACCCAGGTGTTGTGAGTCATAACGAGATTCTCGAGATGTACAAGAAATACATAGAGCCTGAATTCAAGTGGGCTAACTTCACACTGGAAGAACAGGCTAAGGTAATTGTGGCACCCAGAAGCAACAATGAGATGGACAGTTCAAAGCTGAAAAAGGAGTTCCCAGAGTTGCTGGGGATCAAGGAGTCGTTGATCAAGTACGTCTTCGAACCAAACAAGAAAACCTCAGTTTAA 1773 44.39 MATHSPKNILITGAAGFIASHVANRLVRNYPGYKIVVLDKLDYCSNLKNLLPSKPSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGQPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNVGTKKERRVIDVAEDICRLFSRDAKASIKYVDNRPFNDQRYFLDDEKLKNLGWSERTTWEDGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGVERHFEGSEEGKPASYASCNTKMVVPTSRNPGSPYQPSLKFLLYDVCREHGLLMINFATGCIFEYDAKHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLNEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYKKYIEPEFKWANFTLEEQAKVIVAPRSNNEMDSSKLKKEFPELLGIKESLIKYVFEPNKKTSV 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3421344 3423687 + Cp4.1LG01g00730.1 Cpe01g00592 461905

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00592 590 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM1-LIKE 1 389 - -
Cpe01g00592 590 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 332 IPR036291 -
Cpe01g00592 590 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 389 - -
Cpe01g00592 590 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 386 567 IPR036291 -
Cpe01g00592 590 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Cpe01g00592 590 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM1-LIKE 388 586 - -
Cpe01g00592 590 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 1 389 - -
Cpe01g00592 590 Gene3D - 9 313 - -
Cpe01g00592 590 Gene3D - 386 590 - -
Cpe01g00592 590 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 388 586 - -
Cpe01g00592 590 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 388 587 - -
Cpe01g00592 590 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Cpe01g00592 590 Gene3D - 200 322 - -
Cpe01g00592 590 PANTHER UDP-GLUCOSE 4,6-DEHYDRATASE 388 587 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00592 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - gmx:100810341 877.085
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00592 Cpe14g00361 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00592 Cpe-Chr1:3421344 Cpe11g00544 Cpe-Chr11:3225873 6.30E-116 dispersed
Cpe01g00592 Cpe-Chr1:3421344 Cpe14g00361 Cpe-Chr14:2196371 8.07E-133 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo16g00460 . . . . Cpe14g00361 Cpe01g00592 . . . . . . . . . . . . . . . . . .
Vvi19g26 . . . . Bpe09g00271 Bpe08g00995 Bma10g00464 Bma13g00919 . Cmo04g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00719 . Bda12g00810 . . Bma07g01155 . . . . Cma04g00655 . . . . Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00592 Cpe_Chr01 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0