Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00595 ATGAAGATTCAGTGCAATGTCTGCGAAATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAACATTCATGCCGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAGATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATACTTGCGTAACGGGTCATCAACGCTTTCTGCTCACTGGTGTGAAAGTCGCACTCGAGCCAACCGACCCTATTCCTTGTTCTTCCATAGCTAATTCACATTCTAGAGAGATATCAACCAAAACGAAAGTTAGACCACCGTCTGATAAGGAATTCTCGATGCCTTCGTCTGGTGAATTCAGCAGAAGCCTGTCTGTTCAAGGTGGATCTGATGACTTCATGACAAATAGAACATTGCTTACTGGAGATTCTGCTTCTGGTGGCTTTTCACATTGGCAAATAGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGGGTTTATGGATAACGGATCATCCAAGGTATGA 615 46.02 MKIQCNVCEMAEATVLCCADEAALCWACDENIHAANKLASKHQRVPLSGSSSQMPRCDICQEASGYIFCLEDRALLCRKCDVAIHTANTCVTGHQRFLLTGVKVALEPTDPIPCSSIANSHSREISTKTKVRPPSDKEFSMPSSGEFSRSLSVQGGSDDFMTNRTLLTGDSASGGFSHWQIDELINLTGFNQNYGFMDNGSSKV 204
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3434320 3438059 + Cp4.1LG01g00700.1 Cpe01g00595 461908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00595 204 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cpe01g00595 204 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cpe01g00595 204 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Cpe01g00595 204 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cpe01g00595 204 CDD Bbox1_BBX-like 57 99 - -
Cpe01g00595 204 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 203 - -
Cpe01g00595 204 Gene3D Classic Zinc Finger 1 93 - -
Cpe01g00595 204 CDD Bbox1_BBX-like 5 47 - -
Cpe01g00595 204 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 203 - -
Cpe01g00595 204 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cpe01g00595 204 MobiDBLite consensus disorder prediction 123 154 - -
Cpe01g00595 204 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00595 Cpe14g00359 CST
Cpe01g00595 Cpe14g00229 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00595 Cpe-Chr1:3434320 Cpe07g00385 Cpe-Chr7:2483126 1.44E-37 dispersed
Cpe17g01088 Cpe-Chr17:8252826 Cpe01g00595 Cpe-Chr1:3434320 9.06E-45 transposed
Cpe01g00595 Cpe-Chr1:3434320 Cpe14g00359 Cpe-Chr14:2185559 1.16E-127 wgd
Cpe01g00595 Cpe-Chr1:3434320 Cpe14g00359 Cpe-Chr14:2185559 1.16E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48765 PF00643 zf-B_box 1.10E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00595 - - bhj:120091143 372.474