Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00599 ATGACGTCGGGGACGAGGCTACCAACATGGAGGGAGCGGGAGAACAACAAGAGAAGGGAGAGAAGGAGAAGAGCTATAGCGGCTAAGATCTTTGCTGGACTCAGGATGTATGGCAACTACAAGCTTCCCAAGCATTGCGATAACAATGAGGTGCTTAAAGCTCTCTGCAACGAGGCAGGATGGAGCGTCGAACCTGATGGTACCACTTATCGTAAGGGATGCAAGCCAATTGAACGTATGGATGTGGTTGGCGGATCGGCATCCGCAAGTCTGTACGCATCTCACCAACCAAGTCCTTGTGCTTCATTCAATCCAAGCCCTGGCTCATCTTCTTTTCCAAGTCCAGCATCATCCTCATATGTCGCTAATATGAATGCTGATGGCAATTCACTAATCCCATGGCTCAAAAACCTTTCATCTTCATCATCTTCGGCATCCTCATCTAAACTTCCCAATCACTATATTCATGGAGGTTCCATCAGTGCACCTGTTACTCCTCCTCTGAGTTCCCCAACTGCTCGAACACCCCGACTGAGAGCCGACTGGGAGGATCAGTCTGTACTTCCAGGATGGAGTACACACTATAATTCCTCCCTGCCATCTTCTACTCCTCCAAGTCCTGGACGTCAGATTGTTCCCAATCCAGAATGGTTTGCTGGCCTTAGGATTCCTCAGGGTGGGCCCAATTCTCCAACATTTAGTCTTGTTTCTACTAACCCATTTGGTTTCAAGGAAGCAGCAATGAATGGTGGAGGAGGATCTCGCATGTGGACCCCTGGTCAAAGTGGGACCTGCTCCCCTGCCATTGCAGCAGGCTCCGATCACACCGCAGATATTCCAATGTCAGAAGTGATCTCTGATGAGTTCGCATTTGGAAGCAATGCCGCAGGAATTGTGAAGGCATGGGAAGGAGAACGGATTCATGAAGAATGTGGTTCAGATGACCTAGAGCTGACTCTTGGGAACTCAAGGACCAGGTAA 981 49.34 MTSGTRLPTWRERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCNEAGWSVEPDGTTYRKGCKPIERMDVVGGSASASLYASHQPSPCASFNPSPGSSSFPSPASSSYVANMNADGNSLIPWLKNLSSSSSSASSSKLPNHYIHGGSISAPVTPPLSSPTARTPRLRADWEDQSVLPGWSTHYNSSLPSSTPPSPGRQIVPNPEWFAGLRIPQGGPNSPTFSLVSTNPFGFKEAAMNGGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNAAGIVKAWEGERIHEECGSDDLELTLGNSRTR 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3456674 3460038 - Cp4.1LG01g00620.1 Cpe01g00599 461912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00599 326 MobiDBLite consensus disorder prediction 98 117 - -
Cpe01g00599 326 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 1 326 - -
Cpe01g00599 326 MobiDBLite consensus disorder prediction 158 180 - -
Cpe01g00599 326 Pfam BES1/BZR1 plant transcription factor, N-terminal 3 139 IPR008540 -
Cpe01g00599 326 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 326 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cpe01g00599 326 MobiDBLite consensus disorder prediction 1 20 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00599 - - - csv:101210002 574.704
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00599 Cpe14g00374 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00599 Cpe-Chr1:3456674 Cpe20g00481 Cpe-Chr20:2783513 2.71E-136 dispersed
Cpe01g00599 Cpe-Chr1:3456674 Cpe14g00363 Cpe-Chr14:2208805 2.80E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g79 . . . . Bpe09g00267 . . Bma13g00924 Cmo16g00479 Cmo04g00712 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00726 Bda05g00812 . . Bpe03g00874 . . . . . Cma04g00664 Cma16g00445 . . Cpe14g00374 Cpe01g00599 . . . . . . . Cla07g00969 Cam07g1042 Cec07g1113 Cco07g1090 Clacu07g1014 Cmu07g1007 Cre07g1384 . . Chy07g00983 Cme07g01358
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe07g00438 CCT 1 306 BZR Transcription Factor Family AT1G75080 59.5 4.7e-82 302.0
Cpe11g00187 CCT 49 314 BZR Transcription Factor Family AT1G75080 61.2 2.9e-79 292.7
Cpe10g00589 . 28 318 BZR Transcription Factor Family AT1G75080 58.1 3.2e-78 289.3
Cpe19g00793 . 33 323 BZR Transcription Factor Family AT1G75080 58.3 3.2e-78 289.3
Cpe07g00438 CCT 1 306 BZR Transcription Factor Family AT1G19350 57.6 7.6e-80 294.7
Cpe11g00187 CCT 49 315 BZR Transcription Factor Family AT1G19350 61.0 2.9e-79 292.7
Cpe10g00589 . 28 317 BZR Transcription Factor Family AT1G19350 58.9 9.2e-78 287.7
Cpe19g00793 . 33 321 BZR Transcription Factor Family AT1G19350 59.3 1.2e-77 287.3
Cpe10g00589 . 6 313 BZR Transcription Factor Family AT3G50750 58.0 8.4e-77 284.3
Cpe19g00793 . 10 323 BZR Transcription Factor Family AT3G50750 56.3 5.5e-76 281.6
Cpe11g00187 CCT 17 309 BZR Transcription Factor Family AT3G50750 50.2 3.3e-57 219.2
Cpe01g00599 CST 77 326 BZR Transcription Factor Family AT4G18890 54.2 1.5e-49 193.4
Cpe09g00790 CCT 80 326 BZR Transcription Factor Family AT4G18890 51.2 1.2e-48 190.3
Cpe14g00363 . 77 323 BZR Transcription Factor Family AT4G18890 50.6 1.9e-44 176.4
Cpe01g00599 CST 1 326 BZR Transcription Factor Family AT1G78700 72.2 1.5e-117 419.9
Cpe14g00363 . 1 323 BZR Transcription Factor Family AT1G78700 69.9 5.8e-109 391.3
Cpe20g00481 CCT 1 342 BZR Transcription Factor Family AT1G78700 65.8 4.3e-104 375.2
Cpe09g00790 CCT 1 326 BZR Transcription Factor Family AT1G78700 69.2 2.8e-103 372.5
Cpe10g00589 . 28 200 BZR Transcription Factor Family AT4G36780 78.5 1.0e-63 240.7
Cpe19g00793 . 33 204 BZR Transcription Factor Family AT4G36780 75.7 2.4e-60 229.6
Cpe11g00187 CCT 49 213 BZR Transcription Factor Family AT4G36780 57.6 2.5e-38 156.4
Cpe07g00438 CCT 33 204 BZR Transcription Factor Family AT4G36780 56.7 1.6e-37 153.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000940 3 4 6 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 2 2 2 2 6 3 3 85
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48766 PF05687 BES1_N 5.80E-65 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00599 Cpe_Chr01 FPKM 1.001956 1.533792 1.240545 1.493164 0.727318 0.550561 0.731807 0.521695 0.372981 0.412143