Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00600 ATGGGCTGTGTTGGATCGTCGCAGACCAACGGAGATGGATCCACAAAGAAGATACGCAAGCCAAAACCTTGGAAGCATCCTCAGCCAATTACAAGGTCTCAGCTCACGCAGCTACGTGATGAGTTTTGGGACACTGCACCTCACTATGGCGGCCGAAATGGTAGTCCTGTCTCTAACATATTTGTGCCAGTGTTAAAGTCTTCATGGTTTTTTAGAGAGATTTGGGATGCACTACGAGCAGCTGCTGAAGCAGAGCTATCTCTAGCGCAAGCAATCATAGACAGTGCTGGGGTCATCGTTCAAAATGCAGATTTAACAGTTTGTTACGATGAGAGAGGTGCCAAATATGAACTGCCCAAATATGTTTTGAGTGAACCAACCAATTTGATTCGTGACAGTTCATAA 405 45.43 MGCVGSSQTNGDGSTKKIRKPKPWKHPQPITRSQLTQLRDEFWDTAPHYGGRNGSPVSNIFVPVLKSSWFFREIWDALRAAAEAELSLAQAIIDSAGVIVQNADLTVCYDERGAKYELPKYVLSEPTNLIRDSS 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3462923 3467517 - Cp4.1LG01g00630.1 Cpe01g00600 461913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00600 134 Gene3D - 71 123 IPR038169 -
Cpe01g00600 134 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 72 131 - -
Cpe01g00600 134 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 53 - -
Cpe01g00600 134 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 72 131 IPR039869 -
Cpe01g00600 134 PANTHER UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED 1 53 IPR039869 -
Cpe01g00600 134 MobiDBLite consensus disorder prediction 1 31 - -
Cpe01g00600 134 Pfam Ubiquitin-binding domain 15 53 IPR032752 -
Cpe01g00600 134 Pfam Ubiquitin-binding domain 72 132 IPR032752 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00600 - - - cmax:111481944 267.7
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00600 Cpe14g00364 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00600 Cpe-Chr1:3462923 Cpe02g00664 Cpe-Chr2:4179276 3.34E-64 dispersed
Cpe01g00600 Cpe-Chr1:3462923 Cpe14g00364 Cpe-Chr14:2215426 2.85E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g91 Blo03g00703 . . Bda09g00548 Bpe09g00264 Bpe08g00988 . Bma13g00925 Cmo16g00465 . . . Car01g01074 . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00727 . Bda12g00815 Bpe11g00442 . . Bma14g00272 . Cmo01g01308 . Cma04g00665 Cma16g00432 . . Cpe14g00364 Cpe01g00600 . . . . . . . . . . . . . . . Csa04g00814 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001260 3 5 3 5 4 1 3 2 1 2 2 2 3 2 2 2 2 0 3 2 2 2 2 2 2 2 2 5 3 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00600 Cpe_Chr01 FPKM 31.070652 34.50362 27.454084 25.207544 42.507732 36.895744 38.798405 28.641058 28.453144 30.033409