Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00601 ATGGCTTATTGTTACCTCTTCTTCTGGAGCTGTCGACCATTGATTAAACACTTGTCTTCTATTGTCAAATGGACTAGGTCTTCATATAAAGCCCCCCCATCAGATGGTAATGTCCTGCAATTTGAGAATGGGTACTTGGTTGAGACTGTACTGGAGGGAAATGAAATTGGTGTTCTTCCACATAAAATCCATGTCTCGAAGGAGGGCGAGCTTTTCGTCGTTGATTCGGTTAATAGCAATATTGTGAAGATCACCCCTCCATTATCCAAATATACTAGAGCAAGATTGGTTGCTGGGTCATTTCAAAGCCACACGGGGCATGTTGATGGAAAGCCAAACGACGCCCGTTTTAATCATCCAAAGGGTGTAACCGTGGACGATAGAGGGAATGTGTATGTTGCTGATACCTTGAATTTGGCCATCAGAAAGATTGGAGATGCTGGTGTGACAACCATTGCAGGGGGCAAGTCAAATGTCGCAGGCTACAGAGATGGACCAGGTGAAGATGCGAAGTTCTCAAACGATTTTGATGTAATGTACATCCGATCTACTTGTTCCTTGTTAGTTATTGACCGTGGAAATGCTGCGATTCGGCAAATATTTCTAAATCCGGAGGATTGCGAATATCAAGATAGTTCAATTTCCAACAGTGATGTTCTCATGATCATTGGTGCTGTTTTGGCGGGATACGCGACGTATATGCTTCAACAGGGTTTTGGAGCCTCGAGCATCTCTCAGACATATTCTCCATTAGAGACTGAGTATAGAGAAAAACCAAACAAGGAAGAATCGACCTCGCCTGTGGATAGTGTAAGGGAGACACCAGGATGGCCATCATTTGGACGACTCATCATTGATCTCTCCAAACTGGCTCTTGAAGCTGTGGCTAGCATTTTCCTTTCTTTTGTTCCTGCCCGTTTCAGAGCTCGTAGCACCCCGAAAGGCCTGACCCCGTTGAAAGATTCTCTCTGGATGCCTGAAGATGAACCCGATCGACCACCAGCTCAAATGCAGAGAGCTCCTGTTCCTCTGACCGAAACAAGACAAGCTCATATAGGCAATGCAAGTGATCAATTTCCTGAGGTGATGATGAAGCCTCCAAAGCTCAAATCAAGTAGTTTCAAAGATCCCTCACTGCAAAGTAAGCACCGATCGAAACGTCACGACCGTGCTGATTTTTACGAATCTGGTGAGATACCTCCACCTTATAGCAGGTCCAAGAGCCAAAAAGAAAGACCACGACACCGCCAGCGCGAGAAAAGTGCAGAGATCCATCACGGAGCTGCAGGACCTGAGCCAAAGCCAATGGAGATGAAGCCAGTCAATTACGACAATTCAAACTTAGAACATTACAACATCAGGAATAAGTATGAGCCAAATACTTCCTATGGATTCTAA 1398 45.06 MAYCYLFFWSCRPLIKHLSSIVKWTRSSYKAPPSDGNVLQFENGYLVETVLEGNEIGVLPHKIHVSKEGELFVVDSVNSNIVKITPPLSKYTRARLVAGSFQSHTGHVDGKPNDARFNHPKGVTVDDRGNVYVADTLNLAIRKIGDAGVTTIAGGKSNVAGYRDGPGEDAKFSNDFDVMYIRSTCSLLVIDRGNAAIRQIFLNPEDCEYQDSSISNSDVLMIIGAVLAGYATYMLQQGFGASSISQTYSPLETEYREKPNKEESTSPVDSVRETPGWPSFGRLIIDLSKLALEAVASIFLSFVPARFRARSTPKGLTPLKDSLWMPEDEPDRPPAQMQRAPVPLTETRQAHIGNASDQFPEVMMKPPKLKSSSFKDPSLQSKHRSKRHDRADFYESGEIPPPYSRSKSQKERPRHRQREKSAEIHHGAAGPEPKPMEMKPVNYDNSNLEHYNIRNKYEPNTSYGF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3468372 3473606 - Cp4.1LG01g00640.1 Cpe01g00601 461914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00601 465 MobiDBLite consensus disorder prediction 377 395 - -
Cpe01g00601 465 Pfam NHL repeat 117 141 IPR001258 GO:0005515
Cpe01g00601 465 MobiDBLite consensus disorder prediction 445 465 - -
Cpe01g00601 465 PANTHER - 12 465 - -
Cpe01g00601 465 MobiDBLite consensus disorder prediction 254 268 - -
Cpe01g00601 465 SUPERFAMILY NHL repeat 56 174 - -
Cpe01g00601 465 MobiDBLite consensus disorder prediction 252 273 - -
Cpe01g00601 465 Gene3D - 6 201 IPR011042 -
Cpe01g00601 465 MobiDBLite consensus disorder prediction 415 432 - -
Cpe01g00601 465 MobiDBLite consensus disorder prediction 316 465 - -
Cpe01g00601 465 PANTHER NHL DOMAIN-CONTAINING PROTEIN 12 465 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00601 - - - mcha:111012893 766.533
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00601 Cpe02g00663 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00601 Cpe-Chr1:3468372 Cpe02g00663 Cpe-Chr2:4173749 1.37E-175 dispersed
Cpe01g02357 Cpe-Chr1:19733159 Cpe01g00601 Cpe-Chr1:3468372 9.48E-76 dispersed
Cpe01g00601 Cpe-Chr1:3468372 Cpe13g00910 Cpe-Chr13:7759641 9.79E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g92 . . . Bda09g00547 . Bpe08g00989 . . . Cmo04g00713 . . . . . . Cpe02g00663 . . . . . . . . . . . . . . Cone6ag0200 Cone9ag0231 . . . . . . . . . . . . . . . . . Cma04g00666 . . . . Cpe01g00601 . . . . . . . . . . . . . . . Csa04g00813 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002564 1 4 1 1 1 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00601 Cpe_Chr01 FPKM 13.316218 14.584152 15.358013 14.863515 18.398983 18.93535 18.673462 25.90781 25.653097 24.681362