Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00608 ATGGCTAATCGGGGTGGGGGGTCGTTTTCACCCTCAAATGTTTCATCTCAAGGTTCAGGAAGAGATGGCCTTTACGTTGAGCTATGGAAGGCCTCGGCTGGGCCTCTTGTCGAAGTTCCTCGTGTTCATGAACATGTTTTCTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTCCCTTCCTTTAATCTTCCCTCCAAAATTCTCTGTCATGTAGTTGATGTCCGGCTGCTGGCAGAGCAGGAGACGGATGAGGTTTATGCACAGATATCTTTAATTCCAGAAGGAAATCAAGAGGAACCTGCAACTCCTGGTCCTTCGCCGGGGGAATGTCGAAAATCGAAAGTTCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGATTCTCCGTGCTCCGTAAACACGCTACCGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCGACTCAAGAACTCATAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATATTCAGGGGTCAACCTCGAAGGCATTTGCTAACGACCGGATGGAGCACCTTTGTTACGTCTAAGAGATTAGTTGCTGGAGATTCGTTTGTATTCTTGAGGGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCGTCTTTCTCGTCAACAAAGCACCATGCCTTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCTGCTGCAACTCTAACTCGCTTCGTTGTCTATTATAAGCCGAGGGCAAGCCAGTTTCTGGTCAGCTTAAGTAAGTATAAAGAAGCCATGAACACTAAGTTCTTAGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGAGAGGACTCTCCTGAGAGAAGGTTTTCGGGCACCATAATCGGCGTTGACGACATATCTCCTTACTGGCCCAATTCGCAATGGCGATCACTGAGAGTTCAATGGGATGAACTTGCATCTATTCAAAGACCCGAGAGGGTTTCGCCATGGGAGATCGAACCGTTTGTGGCTCCCGTGTCCCAGAGCATTCCTCAATCAATTTCGGTAAAGAACAAACGGCCTCGGCCTCCACTTGACATTCCAGAGTCTGATAATTCAACCGTGACAACTCTTCGACATCCAGTATCGACTCAACCACATGATGATAAAACACAGCTGAGTGTTCCTGCAGGATGGCATTACAAGCAAACAGATATTAGCAGCAATGGGAATTCGGTATCGAGGACTCATAACGAGGGTTCTTGGTTAACCGTCCCGAATGGGAGTGTTTCGCAGCATCGATTAAAGGATTCGACAGAGGACCATAAAAGCAATTCTGTTTGGTCAGCAGTCTTCCCTGGAGTGCCAACAGCACACTCGACGTGTCCAACTCCACGCACATCGAACCCAATGAGTGACCAAATAAATGAGTTTGGGGAAGAGGGGAGGAAAACCGAGGTGGCTCCTAGCTGTCGCTTGTTTGGGATCGAGCTCATTGATCATTCTAAGAGGCCCGTTCCACCCGAAAGGACTTCTGATCAATCGAACTGCGCAGCAAATGAAGTCACTGAAAGCCATGTCAATACCTTGCTGTCATCTAATGCAGAGCAGCAGGGCTCAAACCTGCCAAAGGCTTCTTCTAAAGAACGAAAATTAGGACTTTTACAAGCACTTCCTAAAGAGATCCAGCACAAGCACAATGCCTCGACCAACTGTCGAAGCCGAACCAAGGTTCAAATGCAGGGGATGGCTGTGGGACGAGCGGTGGACCTTACGACATTGGTAGGGTATGACCAACTCATTGACGAAATGGAAAAGATGTTTGATATCAAGGGAGAACTTCGTCCTCGTGACAAGTGGGAGATTGTATTCACAGACGATGAAGGAGATACGATGCTCATGGGCGATTATCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCGAGTCAAGATGTAAAGACGAGTTCGGGCAGAAGACTCACAATGTCTGCGATCGAATTCGATGGAACTGCAATAACCTCGGAATCAGCTGATAGCTGA 2100 47.52 MANRGGGSFSPSNVSSQGSGRDGLYVELWKASAGPLVEVPRVHEHVFYFPQGHMEQLEASTNQELNQKLPSFNLPSKILCHVVDVRLLAEQETDEVYAQISLIPEGNQEEPATPGPSPGECRKSKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLSRQQSTMPSSVISSHSMHLGVLATASHAAATLTRFVVYYKPRASQFLVSLSKYKEAMNTKFLVGMRFKMRFEGEDSPERRFSGTIIGVDDISPYWPNSQWRSLRVQWDELASIQRPERVSPWEIEPFVAPVSQSIPQSISVKNKRPRPPLDIPESDNSTVTTLRHPVSTQPHDDKTQLSVPAGWHYKQTDISSNGNSVSRTHNEGSWLTVPNGSVSQHRLKDSTEDHKSNSVWSAVFPGVPTAHSTCPTPRTSNPMSDQINEFGEEGRKTEVAPSCRLFGIELIDHSKRPVPPERTSDQSNCAANEVTESHVNTLLSSNAEQQGSNLPKASSKERKLGLLQALPKEIQHKHNASTNCRSRTKVQMQGMAVGRAVDLTTLVGYDQLIDEMEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKTSSGRRLTMSAIEFDGTAITSESADS 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3504405 3512494 - Cp4.1LG01g00450.1 Cpe01g00608 461921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00608 699 SUPERFAMILY CAD & PB1 domains 585 664 - -
Cpe01g00608 699 PANTHER AUXIN RESPONSE FACTOR 9 19 684 - -
Cpe01g00608 699 SMART B3_2 129 231 IPR003340 GO:0003677
Cpe01g00608 699 CDD B3_DNA 127 229 IPR003340 GO:0003677
Cpe01g00608 699 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677
Cpe01g00608 699 MobiDBLite consensus disorder prediction 384 406 - -
Cpe01g00608 699 Gene3D - 290 363 - -
Cpe01g00608 699 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Cpe01g00608 699 MobiDBLite consensus disorder prediction 368 406 - -
Cpe01g00608 699 Gene3D - 126 230 IPR015300 -
Cpe01g00608 699 ProSiteProfiles PB1 domain profile. 588 669 IPR000270 GO:0005515
Cpe01g00608 699 Pfam AUX/IAA family 578 672 IPR033389 -
Cpe01g00608 699 Gene3D - 583 676 - -
Cpe01g00608 699 SUPERFAMILY DNA-binding pseudobarrel domain 120 258 IPR015300 -
Cpe01g00608 699 Pfam Auxin response factor 255 333 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cpe01g00608 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 684 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00608 Cpe-Chr1:3504405 Cpe05g00788 Cpe-Chr5:4895382 0 dispersed
Cpe01g01717 Cpe-Chr1:11549242 Cpe01g00608 Cpe-Chr1:3504405 4.15E-16 transposed
Cpe17g01020 Cpe-Chr17:7722341 Cpe01g00608 Cpe-Chr1:3504405 0 transposed
Cpe01g00608 Cpe-Chr1:3504405 Cpe13g00097 Cpe-Chr13:707914 0 wgd
Cpe01g00608 Cpe-Chr1:3504405 Cpe14g00449 Cpe-Chr14:2820937 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48767 PF02362 B3 8.70E-22 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00608 K14486 - csv:101213942 1096.65