Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00640 ATGCATGACGATGCCCAAATCCCCTTCCTTGAAACTCCACAAGGAGCTAAGGTCGAAGCTAAGGTGAATATGACGGTAGCCATAAACTGTCCGTCAGAGATGAAAGCAACATCAAATGGAGTATTTCAGGGCGATAATCCGCTTGATTTCGCTCTTCCTTTGGCGATTCTTCAGATATGTTTGGTAGTCATTCTCACTCGTGTTCTTGGTTTGCTTTTTCGACCACTCAGACAACCTCGTGTCGTTGCAGAGATCGTTGGCGGAATATTGCTGGGACCATCAGCGGTGGGTCGGAGCCATGAATTTCTACACGCAGTTTTCCCGGAGAGAAGCCTAACAATGTTGGACACGTTGGCCAATCTGGGTCTGCTCTTCTTCTTATTTCTAGTTGGGCTCGAGCTGGATCCCAAGTCCCTCCGCCATACCGGAAAGGCCGCCATGGGCATCGCCCTCGCCGGAATCACCCTCCCCTTCCTCCTCGGCATCGGCACCTCCTTTGTTCTCCGTTCCACCATCTCCCAAGGCGTCCATGCCCCTCCCTTCCTTATCTTCATGGGCGTAGCTCTCTCCATCACTGCCTTCCCTGTTCTGGCCCGTATTCTGGCCGAGCTCAAGCTTTTAAACACTAACGTCGGCCGTATGGCTATGTCCGCCGCCGCTGTCAACGATGTCGCCGCCTGGATCTTCCTCGCTCTCGCCATCGCCCTCTCCGGTACTGGCCGCTCCCCTCTCGTCTCCCTCTGGGTCTTCCTCTTTGGGTTTGCTTTTGTCCTGTTCTGCTTCTTCACTCTGCCGCCCATTTTCCGGTGGATGTCCAGTCGCTGCTCCGACGGCGAACCCATCAGCGAACTCTATATTTGCGCTACCTTATCCATCGTCCTCGCCGCTGGTTTCTTCACCGATTTAATCGGAATACACGCCCTCTTTGGCGCCTTCGTTGTCGGCGTTCTTGTACCAAAAGACGGCCCACTGGCCGGCGCTCTCGTCGACAAAGTCGAAGGTCTGGTCTCTGGTCTCTTCCTCCCTCTTTACTTCGTTTCTAGCGGATTGAAAACCAACATCGCCACCATCAAAGGCGCCCAATCGTGGGGTCTCCTCGTTCTCGTCGTTTTCACCGCTTGTTTGGGGAAAGTCCTGGGCACCATCGCCGTCGCACTCTTCTGCAAAATGCCAGTCCAAGAATCAATCGCTTTGGGATTCTTGATGAACACGAAAGGGCTCGTGGAATTAATCGTCCTCAACATCGGGAAAGACAGAAAAGTTCTGAACGATCAAACTTTTGCAATTCTCGTTCTAATGGCTATCATCACGACCTTCATCACAACCCCAATCGTGATGGCGGTTTACAAACCGGCAAAGAGAAAAAGCAAATCTGAATACATAAACAGAACAATTGAGCGTGAGGATCCCAATTCAGAGCTGCGGATTTTGGCTTGTTTTCACTCTGTTACCAACATTCCTTCGGTTTTAAACTTGATTGAGGCGTCTCGTGGGGCGGAAGGAAAAGAATGGGTTGGGCGCCGGGTTTGCGTTTATGCTATGCATTTGATGGAGCTGACGGAGAGGTCGTCGGCCATTTTTATGGTCCACCGAGCTCGGAAGAATCAGCTTCCGTTCTGGAATAAAGGGGGGAAGGCGGATTCCGATCAAATCGTGGTGGCTTTTGAGGATTTTGGGCAGCTTAGTCGGGTGTCTATACTTCTCGAACAACCACCTTGCTCTGTTGGGATCTTGGTCGACCGAGGATTTGGAGGTGGGTCTCACATCAGCGCTAGCAACGTCTCTTCCACCATAACTATCTTCTTCTTCGGCGGCAGTGACGACCGTGAAGCACTAGCCTACGGTCGGAGAATGGCCGAACATCCCGGAATAACGCTAAATGTTATCCGCTTCCTTCCAAGCCCCGACATGGTGGTAGAATCCATTGTGGTTGACATTAACAAATACGACACAAATGATGTTTCAGCAAGCATAGATGAGAGGGTACTGTCGGAGTTGAAGATGAAAAAAACAGAGGAGAAGTCGATTAAATATGAAGAGAGGGTTGTGAGCAATAGCTGCGACGCCATTGATGTAATGAGGGAGTTTGGTAGATGCCATTTGATATTGGTGGGTCGAATGCCAGAAGGGCGAGTCGTGGAGAGCTTTCATTTGAAGAGTGTGGAATGTCCTGAGTTGGGGCCAATTGGGAGCTTGTTCACATCGCCAGAGCTCCTCACATCAGCATCCCTGTTGGTGATTCAACAGTTTCGTGTTGAATCGACAATAATGGCTACCAATGCCACTGCTACAGGCGTATGTCCGGCACCCATGAAGGCCACTTCAAATGGTGTTTTTCAAGGCGATAATCCTCTGAATTATGCGCTTCCTCTCGCCATCCTTCAGATTTGTCTCGTAGTCCTTCTCACTCGTGCTCTCTCTTTTCTTCTCCGGCCAATTCGACAGCCTCGTGTCATTGCTGAGATCGTCGGAGGAATCTTGCTGGGTCCATCGGCGTTTGGCCGGAACTTGAACTACTTACACACAATCTTTCCGGCGAAGAGCCTCACCGTATTGGATACGTTGGCCAACTTGGGTCTTCTCTTCTTCCTCTTTCTCGTCGGCTTGGAGTTGGACCCCAAATCGCTCCGCCCTACCGGAAAACGAGCAATGTGCATTGCCTTAGCTGGAATCACCCTCCCGTTCATCATCGGCATCGGTACCTCCATCATTCTCCGATCAACCATTTCCAAAGGTGTCGATGAAGCCGCTTTCCTTGTCTTCATGGGTGTCGCTCTTTCAATCACTGCATTTCCCGTTCTGGCGAGAATTTTGGCTGAGCTCAAGCTTTTGACCACTGACGTCGGTCGTATGGCCATGTCTGCTGCCGCTGTCAATGACGTGGCGGCGTGGATTCTTCTAGCGTTGGCAATTGCACTCTCCGGCACTGGCAACTCCCCTCTTGTTTCCCTTTGGGTTTTCTTGTCTGGCTCTGGTTTTGTCCTGTTTTGTATCTTTTTCTTTCCACCGGTGTTCCGGTGGATGACGCAACAGTGCTCTGAGGGTGAGCCGGTGAAGGAACTGTACATTTGTGCCACTTTGTCGATTGTTTTGGCTGCTGGGTTTGTCACGGATTTGATCGGAATCCATGCCCTGTTCGGAGCTTTCATCATAGGAGTTTTGGTTCCTAAAGAAGGCCCATTCGCCGGAGCTCTGGTTGAGAAAGTTGAAGATCTCGTCTCTGGTCTTTTTCTTCCACTATACTTCGTTTCAAGCGGATTAAAAACAAACGTGGCAACAATTAAAGGAGCTCAATCATGGGGTCTTCTTGTTTTAGTCATTTTCAACGCCTGTTTTGGTAAAATCGTCGGAACTGTTTCCGTTGCCATGTTCTGCGAAGTTCCATTACAAGAATCATTGGCTTTGGGGTTTTTGATGAACACGAAAGGCCTAGTCGAATTAATCGTTCTAAACATCGGCAAAGATAGAAAGGTTCTGAACGATCAGACATTTTCGATTATGGTTCTAATGGCGATCTTCACGACGTTCATCACAACTCCAATTGTTATGGCGGTTTACAAGCCGGAGAAAAAACAGAGCAAATCCAATTACGAGTACAGAACACTCGAAAGGGAAGATCCTGATTCCCAGCTCCGGATTTTGGCTTGTTTCCACTCCATCGACAATATTCCGGCGATGATTAACCTAATTGAGGCCTCAAGAGGAATAGAAAAGAAAGCAGGTCTCTGTGTTTATGCTTTGCATTTAATGGAGCTAACAGAGAGATCCTCTGCGATTCTTATGGTTCACAAAGCACGAAAAAACGGCGTACCCTTTTGGAATAAAGCTCGGTCCGATTCGAGCCAGATTGTTGTCGCTTTCGAAGCATTCCGGCAGCTCAGCCGGGTCTCAATCCGACCGATGACCGCCATTTCTGCTCTGTCCGATATGCACGAAGATATCTGCAGTAGTGCAGAGAGAAAAAGGGTCGCCATTATAATCCTCCCATTCCACAAGCACCAAAGATTGGACGGATCTCTGGAAACGACGAGGACCGATTACCGGTTAGTAAACCGAAAAGTTCTGGAACAATCGCCATGCTCTGTCGGAATTTTGATTGACAGAGGACTCGGCGGTGGGTCCCATGTCTGCGCTAGTAACGTCTGCTCCACTATCGCCGTCTTTTTTTTCGGCGGTCGTGATGACCGTGAAGCTCTGGCGTTCGGGAAAAGAATGGCAGAGCATCCCGGAATCAGCTTGCAGGTCATCCGATTCAGTTTCATCCCCGATTTTCCGTCAGAATCCGCCACCGTCTATATAAACAAGGACTCCGCCGTTTTAGACGCCGACGATATGGCGTTGGCGTCAATTGAGTACGAAGAGAGGAAGGTGAGCAAAGGGTGTTCCGCCATTGAAGCAATGAAGGAGTTCAGTAAATGCAATTTGATTCTGGTCGGAAGGATGCCGGAGGGTGAAGTGGTGAGGAGTATCAATATGAACTATTCCGAGGGTTCGGAGCTTGGGCCAATTGGCCGACTGTTAGCGTCGCCGCAGTTTTCGACAACCGCTTCCGTGCTGGTGGTGCAAATAATGGCTTTGAATACTACGGCAGTGACGAAATGTCCATCTCCAATGAAGCCAACATCAAATGCCATTTTCGAGGGCGATAATCCTCTTGATTTTGCTCTCCCTCTTCTCATTCTGCAGATATGTTTGGTACTCATACTTACTCGTGGCCTTGCTTTTCTTCTGAGGCCATTAAAACACCCACGAGTGATTGGAGAAATTATTGGAGGAATACTTCTTGGTCCATCCGCTCTTGGACGTAACAAGAACTTTCGTTATACGATATTTCCATCCAATATTATCATATTATGCCTTAGCAAACACAGTGGATTGTTATTCTTCCTCTTTCTTGTGGGTCTTGAGTTGGATCTAAAGTCGATACGTCGTACTGGACAGAAGGCCCTTGGCATTGCTGTTACTGGAATCAGCCTTCCCTTTGCTCTAGGAATTGGATCATCATTTGTCCTCCAAAGAGCCATATCCAAAGGTGTAAATGCTTCTGTATTTCTCATATTCATGGGAATTGCACCTTCAATAACAGCATTTCCCGTCCTAGCTCGTATTCTTGCCGAGCTTAAACTTCTAACCACTGATGATGGCAGGATGGCTATGTCCGCTGCAGCAGTGAACGACATAGCTGCATGGATTCTCCTTGCTCTTGCATTGCATTATCTGTTTGGGTTCTTTTATCTGGCTGCACCTTTGTTGTTGCTGATATGTTATGCCGCTATCGTCCTTACTGCTGGATTTGTCACAGATTTTATTGGGATACATGCTATGTTTGGAGCTTTTGTTGTTGGAGGAAACCATAAAAAGTGCTGCAGAGGCAATGGAGACAGTGGAGGAGCTGAAAAGCTGCAATCTGTATCTCATTGGCCAAACACAGGATATCAAAGCAACACTTATGAACCTCACCACTTTAGGAGTGGTTAA 5478 48.67 MHDDAQIPFLETPQGAKVEAKVNMTVAINCPSEMKATSNGVFQGDNPLDFALPLAILQICLVVILTRVLGLLFRPLRQPRVVAEIVGGILLGPSAVGRSHEFLHAVFPERSLTMLDTLANLGLLFFLFLVGLELDPKSLRHTGKAAMGIALAGITLPFLLGIGTSFVLRSTISQGVHAPPFLIFMGVALSITAFPVLARILAELKLLNTNVGRMAMSAAAVNDVAAWIFLALAIALSGTGRSPLVSLWVFLFGFAFVLFCFFTLPPIFRWMSSRCSDGEPISELYICATLSIVLAAGFFTDLIGIHALFGAFVVGVLVPKDGPLAGALVDKVEGLVSGLFLPLYFVSSGLKTNIATIKGAQSWGLLVLVVFTACLGKVLGTIAVALFCKMPVQESIALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAIITTFITTPIVMAVYKPAKRKSKSEYINRTIEREDPNSELRILACFHSVTNIPSVLNLIEASRGAEGKEWVGRRVCVYAMHLMELTERSSAIFMVHRARKNQLPFWNKGGKADSDQIVVAFEDFGQLSRVSILLEQPPCSVGILVDRGFGGGSHISASNVSSTITIFFFGGSDDREALAYGRRMAEHPGITLNVIRFLPSPDMVVESIVVDINKYDTNDVSASIDERVLSELKMKKTEEKSIKYEERVVSNSCDAIDVMREFGRCHLILVGRMPEGRVVESFHLKSVECPELGPIGSLFTSPELLTSASLLVIQQFRVESTIMATNATATGVCPAPMKATSNGVFQGDNPLNYALPLAILQICLVVLLTRALSFLLRPIRQPRVIAEIVGGILLGPSAFGRNLNYLHTIFPAKSLTVLDTLANLGLLFFLFLVGLELDPKSLRPTGKRAMCIALAGITLPFIIGIGTSIILRSTISKGVDEAAFLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPLVSLWVFLSGSGFVLFCIFFFPPVFRWMTQQCSEGEPVKELYICATLSIVLAAGFVTDLIGIHALFGAFIIGVLVPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIKGAQSWGLLVLVIFNACFGKIVGTVSVAMFCEVPLQESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFSIMVLMAIFTTFITTPIVMAVYKPEKKQSKSNYEYRTLEREDPDSQLRILACFHSIDNIPAMINLIEASRGIEKKAGLCVYALHLMELTERSSAILMVHKARKNGVPFWNKARSDSSQIVVAFEAFRQLSRVSIRPMTAISALSDMHEDICSSAERKRVAIIILPFHKHQRLDGSLETTRTDYRLVNRKVLEQSPCSVGILIDRGLGGGSHVCASNVCSTIAVFFFGGRDDREALAFGKRMAEHPGISLQVIRFSFIPDFPSESATVYINKDSAVLDADDMALASIEYEERKVSKGCSAIEAMKEFSKCNLILVGRMPEGEVVRSINMNYSEGSELGPIGRLLASPQFSTTASVLVVQIMALNTTAVTKCPSPMKPTSNAIFEGDNPLDFALPLLILQICLVLILTRGLAFLLRPLKHPRVIGEIIGGILLGPSALGRNKNFRYTIFPSNIIILCLSKHSGLLFFLFLVGLELDLKSIRRTGQKALGIAVTGISLPFALGIGSSFVLQRAISKGVNASVFLIFMGIAPSITAFPVLARILAELKLLTTDDGRMAMSAAAVNDIAAWILLALALHYLFGFFYLAAPLLLLICYAAIVLTAGFVTDFIGIHAMFGAFVVGGNHKKCCRGNGDSGGAEKLQSVSHWPNTGYQSNTYEPHHFRSG 1825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3695270 3706493 + Cp4.1LG01g00170.1 Cpe01g00640 461953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00640 1825 PANTHER CATION/H + ANTIPORTER 29 566 - -
Cpe01g00640 1825 Pfam Sodium/hydrogen exchanger family 1565 1770 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe01g00640 1825 Pfam Sodium/hydrogen exchanger family 798 1181 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe01g00640 1825 Pfam Sodium/hydrogen exchanger family 60 444 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cpe01g00640 1825 Gene3D - 54 459 IPR038770 -
Cpe01g00640 1825 Gene3D - 1558 1759 IPR038770 -
Cpe01g00640 1825 Gene3D - 791 1196 IPR038770 -
Cpe01g00640 1825 PANTHER CATION/H + ANTIPORTER 568 760 - -
Cpe01g00640 1825 PANTHER CATION/H + ANTIPORTER 1533 1737 - -
Cpe01g00640 1825 PANTHER CATION/H + ANTIPORTER 766 1525 - -
Cpe01g00640 1825 PANTHER CATION/H + ANTIPORTER 1754 1782 - -
Cpe01g00640 1825 PANTHER CATION/H(+) ANTIPORTER 17 29 566 - -
Cpe01g00640 1825 PANTHER CATION/H(+) ANTIPORTER 17 568 760 - -
Cpe01g00640 1825 PANTHER CATION/H(+) ANTIPORTER 17 1533 1737 - -
Cpe01g00640 1825 PANTHER CATION/H(+) ANTIPORTER 17 766 1525 - -
Cpe01g00640 1825 PANTHER CATION/H(+) ANTIPORTER 17 1754 1782 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00640 - - - csv:101202937 1226.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00640 Cpe-Chr1:3695270 Cpe05g01060 Cpe-Chr5:7011636 6.43E-29 dispersed
Cpe01g00640 Cpe-Chr1:3695270 Cpe14g00481 Cpe-Chr14:3033071 0 wgd
Cpe01g00640 Cpe-Chr1:3695270 Cpe14g00060 Cpe-Chr14:330627 3.38E-57 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe05g01060 . 10 790 Antiporter Super Family AT2G13620 71.3 0.0e+00 1113.2
Cpe16g00093 . 21 781 Antiporter Super Family AT2G13620 66.6 1.0e-303 1039.6
Cpe19g00367 . 75 807 Antiporter Super Family AT3G53720 59.3 5.7e-232 801.2
Cpe01g00640 . 839 1522 Antiporter Super Family AT3G53720 50.1 2.1e-181 633.3
Cpe10g00875 . 88 641 Antiporter Super Family AT3G53720 59.9 5.8e-176 615.1
Cpe14g00481 . 1607 2403 Antiporter Super Family AT5G41610 68.4 1.4e-305 1045.8
Cpe01g00640 . 757 1522 Antiporter Super Family AT5G41610 66.9 1.1e-294 1009.6
Cpe01g00640 . 757 1522 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Cpe14g00481 . 11 796 Antiporter Super Family AT4G23700 64.4 5.1e-287 984.2
Cpe01g00640 . 760 1522 Antiporter Super Family AT3G17630 64.0 2.8e-274 941.8
Cpe14g00481 . 809 1574 Antiporter Super Family AT3G17630 63.5 3.6e-269 924.9
Cpe14g00481 . 3 777 Antiporter Super Family AT1G64170 58.1 1.3e-239 826.6
Cpe01g00640 . 767 1522 Antiporter Super Family AT1G64170 57.7 9.3e-233 803.9
Cpe05g01060 . 10 790 Antiporter Super Family AT2G13620 71.3 0.0e+00 1113.2
Cpe16g00093 . 21 781 Antiporter Super Family AT2G13620 66.6 1.0e-303 1039.6
Cpe14g00481 . 3 777 Antiporter Super Family AT1G64170 58.1 1.3e-239 826.6
Cpe01g00640 . 767 1522 Antiporter Super Family AT1G64170 57.7 9.3e-233 803.9
Cpe01g00640 . 757 1522 Antiporter Super Family AT4G23700 67.4 2.6e-291 998.4
Cpe14g00481 . 11 796 Antiporter Super Family AT4G23700 64.4 5.1e-287 984.2
Cpe14g00481 . 1607 2403 Antiporter Super Family AT5G41610 68.4 1.4e-305 1045.8
Cpe01g00640 . 757 1522 Antiporter Super Family AT5G41610 66.9 1.1e-294 1009.6
Cpe01g00640 . 760 1522 Antiporter Super Family AT3G17630 64.0 2.8e-274 941.8
Cpe14g00481 . 809 1574 Antiporter Super Family AT3G17630 63.5 3.6e-269 924.9
Cpe19g00367 . 75 807 Antiporter Super Family AT3G53720 59.3 5.7e-232 801.2
Cpe01g00640 . 839 1522 Antiporter Super Family AT3G53720 50.1 2.1e-181 633.3
Cpe10g00875 . 88 641 Antiporter Super Family AT3G53720 59.9 5.8e-176 615.1
Cpe12g00834 CST 47 790 Antiporter Super Family AT3G52080 54.1 9.2e-233 803.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00640 Cpe_Chr01 FPKM 5.912843 6.053007 7.252688 7.169627 7.943682 8.585494 7.346337 6.097477 5.880618 5.511349