Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00649 ATGGTAATGGATGGTGACATTCATAATTCACATGATATGGCAAGTTCTAGTACTGTCAATTACCAAAGCTCTGATGCTGCTGCTGAAATTGATTGGGTTGGGATTTTTGGTGGTTCCTCTGATGTGAGTTTGGAAATGGAGAAGGGCAGTGGGGTTAGTGAGGGTGCAATAATGGCCATGGGGGACTGTAACTACCAGAATGAGAGTCATGTTCATGTTCATGGAGGGAAGAACAAAGGGAAAATGGCGATGGGAAAAAGAGGTGCAATTCCTAGGGTTGCTTTTCAGACAAGGAGCGCTGAGGATGTTCTTGACGATGGGTATCGATGGAGGAAATATGGTCAGAAGGCTGTCAAACATAGCACTCATCCTAGGAGCTATTACCGATGTACGCATCATACATGCAACGTTAAGAAACAAATTCAACGGCATTCCAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCATAACCATCCATCTGAAAAATTAATGGAGACTCTAACCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAG 552 43.48 MVMDGDIHNSHDMASSSTVNYQSSDAAAEIDWVGIFGGSSDVSLEMEKGSGVSEGAIMAMGDCNYQNESHVHVHGGKNKGKMAMGKRGAIPRVAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLTPLLKQLQFLSGI 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3759854 3760802 - Cp4.1LG01g00130.1 Cpe01g00649 461962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00649 183 ProSiteProfiles WRKY domain profile. 99 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g00649 183 Gene3D WRKY domain 88 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cpe01g00649 183 SMART WRKY_cls 104 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g00649 183 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 15 179 IPR044810 GO:0003700
Cpe01g00649 183 Pfam WRKY DNA -binding domain 105 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cpe01g00649 183 PANTHER WRKY TRANSCRIPTION FACTOR 43-RELATED 15 179 - -
Cpe01g00649 183 SUPERFAMILY WRKY DNA-binding domain 97 163 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00649 Cpe-Chr1:3759854 Cpe04g00481 Cpe-Chr4:5469872 8.21E-37 dispersed
Cpe10g00377 Cpe-Chr10:2227895 Cpe01g00649 Cpe-Chr1:3759854 1.40E-11 dispersed
Cpe01g00649 Cpe-Chr1:3759854 Cpe03g00631 Cpe-Chr3:3760638 1.02E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48770 PF03106 WRKY 9.70E-25 CL0274 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00649 - - cpep:111803929 368.622