Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00649 | ATGGTAATGGATGGTGACATTCATAATTCACATGATATGGCAAGTTCTAGTACTGTCAATTACCAAAGCTCTGATGCTGCTGCTGAAATTGATTGGGTTGGGATTTTTGGTGGTTCCTCTGATGTGAGTTTGGAAATGGAGAAGGGCAGTGGGGTTAGTGAGGGTGCAATAATGGCCATGGGGGACTGTAACTACCAGAATGAGAGTCATGTTCATGTTCATGGAGGGAAGAACAAAGGGAAAATGGCGATGGGAAAAAGAGGTGCAATTCCTAGGGTTGCTTTTCAGACAAGGAGCGCTGAGGATGTTCTTGACGATGGGTATCGATGGAGGAAATATGGTCAGAAGGCTGTCAAACATAGCACTCATCCTAGGAGCTATTACCGATGTACGCATCATACATGCAACGTTAAGAAACAAATTCAACGGCATTCCAAGGATCCAACCATAGTGGTGACAACATATGAAGGGATTCATAACCATCCATCTGAAAAATTAATGGAGACTCTAACCCCTCTTCTCAAGCAATTGCAGTTCCTTTCTGGCATTTAG | 552 | 43.48 | MVMDGDIHNSHDMASSSTVNYQSSDAAAEIDWVGIFGGSSDVSLEMEKGSGVSEGAIMAMGDCNYQNESHVHVHGGKNKGKMAMGKRGAIPRVAFQTRSAEDVLDDGYRWRKYGQKAVKHSTHPRSYYRCTHHTCNVKKQIQRHSKDPTIVVTTYEGIHNHPSEKLMETLTPLLKQLQFLSGI | 183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 3759854 | 3760802 | - | Cp4.1LG01g00130.1 | Cpe01g00649 | 461962 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00649 | 183 | ProSiteProfiles | WRKY domain profile. | 99 | 164 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe01g00649 | 183 | Gene3D | WRKY domain | 88 | 163 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe01g00649 | 183 | SMART | WRKY_cls | 104 | 163 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe01g00649 | 183 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 15 | 179 | IPR044810 | GO:0003700 | |
Cpe01g00649 | 183 | Pfam | WRKY DNA -binding domain | 105 | 162 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cpe01g00649 | 183 | PANTHER | WRKY TRANSCRIPTION FACTOR 43-RELATED | 15 | 179 | - | - | |
Cpe01g00649 | 183 | SUPERFAMILY | WRKY DNA-binding domain | 97 | 163 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00649 | Cpe-Chr1:3759854 | Cpe04g00481 | Cpe-Chr4:5469872 | 8.21E-37 | dispersed | |
Cpe10g00377 | Cpe-Chr10:2227895 | Cpe01g00649 | Cpe-Chr1:3759854 | 1.40E-11 | dispersed | |
Cpe01g00649 | Cpe-Chr1:3759854 | Cpe03g00631 | Cpe-Chr3:3760638 | 1.02E-38 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48770 | PF03106 | WRKY | 9.70E-25 | CL0274 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00649 | - | - | cpep:111803929 | 368.622 |