Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00667 ATGAAAACTACTTCCGAGCACTCTTCATTTACACCAGGCAATCCATCTTCGTCCTTGTCCTCGTCCTCGTCCTCGTCCTCGTTCTCCTCATGGTCGTCGTCGTCGTTTTCCTCTTCCTTCTCACCGCCATCACCATCGTTTCCTGATTTCAACCCCGATAGCTCTACACCATCAGATGATAATAACTCCGATTATAATGAATCTCCAGCACCAAAGTCATCAAAGGACTCTAAGGATAGAAAATCGGGTAAATCTTCAAAAGCGCCAAGCCCGCGGTCATCGACGCCGATTGCTTCAAAATCTCCTTCACCGCGATCTTCATCATCTTCAAAAGATGCATTGACCTCGGGAGATCGGACGGAGGGGAAATCATCACACAAATCATCATCACACAAATCATCCAACAATGATGATTCAGGGTCGTCGGATGTGAGCCCAGGAGTCATAATTGGGGTGGCGGTTGGGGTGGGATTGTTCATAATTCTTCTCATATCATTAATTGCTCTGTGCTCCAAGAAGAGGAAGAGGAAGGAAGATCCTATGTCGTACTATAGTGGAGACAATGCGAATGGACCTAAAGGTGGTAACTATTACAACGGTTCACAAAAACCAAATTGGCACAACAACAACGCAGGGGGGGGTCCGGGCGTGAATGGGTGGCCGCCCATGAGTAGTGAGAACATGACCACAAGCGGTAGTTTTGCAGGGCCTCCTCTGCCTCCACCATCGCCATCCCTTGCGTTCGGGTTCAGCAAGAGCACGTTCACGTACGACGAGCTTGCAGCAGCAACAGGAGGGTTCGCGCACGGCAACCTACTTGGGCAGGGGGGGTTCGGATACGTGCACAAGGGGGTGTTGCCCAACGGGAAAGAGGTGGCGGTGAAGAGCCTCAAGGTGGGAAGCGGGCAGGGGGAGAGAGAGTTCATGGCTGAGGTTGAGATTATTAGTAGAGTCCACCATCGCCATTTGGTGTCCTTGGTTGGCTTTTGCATTGCCGGTGGACAGAGAATGTTGGTCTATGAGTTTGTTCCTAACAACACCTTGGAGCATCACCTTCATGTTAAAGACCTCCCTGTAATGGATTGGCCAACCAGGCTTCGTATTGCCATAGGTTCTGCCAAGGGTCTTGCTTACCTTCACGAAGATTGTCATCCAAAAATTATTCATCGAGATATCAAGTCCGCTAATATTCTAATTGATGCCAATTTCGAAGCAATGGTGGCCGATTTTGGATTGGCTAAGTTGTCTTCAGATACTAACACCCATGTCTCCACCAGGGTTATGGGTACATTTGGGTATTTAGCACCCGAATATGCATCAAGCGGGAAGCTAACAGAGAAGTCTGACGTGTTCTCATTTGGTGTAATGTTATTGGAACTCATTACTGGAAAACGACCGGTTGATCCTCATCATGTTATGGAGGATAGCTTAGTAGACTGGGCACGAGCGATTATTAGCGGAGAAATGGGAGAAGATGTATACGAAGTGCTGGTGGATAAGCGATTAGGAAAGGAGTTCAATACTCAGGAGATGGGGCGCATGGTATCATGTGCTGCAGCCTCCATCCGTCACTCCGCTAGAAAACGCCCCAAAATGAGCCAAGTAGTACGAGCCCTCGAAGGGGATTATTCATTGGACGACCTAAACGACGGGATAAGACCAGGTCAAAGCTCAATTTATAGTGTGGCAGGGTCGGACTATGATTCAAATGCGTACCAAGCCGACATGTCAAGATTCAGGAAACTAGCTTTGTCAGACGACAGCAGTGAGCTCGCAACTTCTAGCAATGACTCACGAGAGATCAACCATCCCGGGACCCAAAGGCCTCTCTTTTGA 1836 48.69 MKTTSEHSSFTPGNPSSSLSSSSSSSSFSSWSSSSFSSSFSPPSPSFPDFNPDSSTPSDDNNSDYNESPAPKSSKDSKDRKSGKSSKAPSPRSSTPIASKSPSPRSSSSSKDALTSGDRTEGKSSHKSSSHKSSNNDDSGSSDVSPGVIIGVAVGVGLFIILLISLIALCSKKRKRKEDPMSYYSGDNANGPKGGNYYNGSQKPNWHNNNAGGGPGVNGWPPMSSENMTTSGSFAGPPLPPPSPSLAFGFSKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHVKDLPVMDWPTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPHHVMEDSLVDWARAIISGEMGEDVYEVLVDKRLGKEFNTQEMGRMVSCAAASIRHSARKRPKMSQVVRALEGDYSLDDLNDGIRPGQSSIYSVAGSDYDSNAYQADMSRFRKLALSDDSSELATSSNDSREINHPGTQRPLF 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3898590 3901300 - Cp4.1LG01g06880.1 Cpe01g00667 461980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00667 611 ProSitePatterns Protein kinases ATP-binding region signature. 273 295 IPR017441 GO:0005524
Cpe01g00667 611 CDD STKc_IRAK 273 541 - -
Cpe01g00667 611 ProSiteProfiles Protein kinase domain profile. 267 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00667 611 MobiDBLite consensus disorder prediction 192 212 - -
Cpe01g00667 611 SUPERFAMILY Protein kinase-like (PK-like) 240 539 IPR011009 -
Cpe01g00667 611 Gene3D Transferase(Phosphotransferase) domain 1 343 549 - -
Cpe01g00667 611 MobiDBLite consensus disorder prediction 116 133 - -
Cpe01g00667 611 MobiDBLite consensus disorder prediction 590 611 - -
Cpe01g00667 611 Pfam Protein tyrosine and serine/threonine kinase 270 539 IPR001245 GO:0004672|GO:0006468
Cpe01g00667 611 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 20 591 - -
Cpe01g00667 611 MobiDBLite consensus disorder prediction 177 237 - -
Cpe01g00667 611 MobiDBLite consensus disorder prediction 71 86 - -
Cpe01g00667 611 MobiDBLite consensus disorder prediction 1 144 - -
Cpe01g00667 611 Gene3D Phosphorylase Kinase; domain 1 244 342 - -
Cpe01g00667 611 MobiDBLite consensus disorder prediction 87 115 - -
Cpe01g00667 611 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 20 591 - -
Cpe01g00667 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Cpe01g00667 611 MobiDBLite consensus disorder prediction 51 70 - -
Cpe01g00667 611 SMART serkin_6 267 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00667 611 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00667 Cpe-Chr1:3898590 Cpe04g01128 Cpe-Chr4:9750604 3.53E-151 dispersed
Cpe01g01532 Cpe-Chr1:9173119 Cpe01g00667 Cpe-Chr1:3898590 1.29E-46 dispersed
Cpe16g00317 Cpe-Chr16:5039746 Cpe01g00667 Cpe-Chr1:3898590 2.43E-64 dispersed
Cpe18g00431 Cpe-Chr18:5399968 Cpe01g00667 Cpe-Chr1:3898590 2.20E-158 dispersed
Cpe18g00604 Cpe-Chr18:6386088 Cpe01g00667 Cpe-Chr1:3898590 1.97E-70 dispersed
Cpe01g00667 Cpe-Chr1:3898590 Cpe05g01252 Cpe-Chr5:8763463 1.02E-170 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62123 PF07714 PK_Tyr_Ser-Thr 3.60E-47 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00667 - - cmos:111447691 971.844