Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00672 ATGAACCAGCAAGAGAGTGAAGAGCATGAAGCAGTACAAATGTGTGAGTTGTACACTCCATTATACATCCAAATGCTTCCCCAACAACAAGATAATAATTTGGTTGAAGCAAAACGGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCGGATGCGGTGGCAAAGAAGAGGAAGCTCACAGCCGCGCAGGTTCATCTTTTGGAGACTAATTTTGGGAGTGAACATAAGTTGGAGTCGGAAAGAAAGGACCGTCTCGCGTCCGAGTTAGGGCTCGATCCTCGCCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCCCGCTGGAAGAACAAGAAACTTGAGGAGGAATATTCTAGCTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACTCAGATACTGAAGCTGAAAGAACAACTTTCAGAAGTGGAGAAAGAAAAGGAGAGGTTGATAATGGGAGAACGGGGCGATGGGCCTTTAAGCAGCAGCAGCCCAAGCCCATCGATGTCAATGGACGCCGTCGACCCTACAGGCCTTGGGGAATTTGGAGCATCATTCGAAGATGTGTTCTATTACATGCCTGAAAACTCTTGCATTTATGGCATGGAATGGCCCAATCCCTATATTTGA 645 47.6 MNQQESEEHEAVQMCELYTPLYIQMLPQQQDNNLVEAKRRRRRKKNRGSEADAVAKKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKLHESVVVEKCRLETQILKLKEQLSEVEKEKERLIMGERGDGPLSSSSPSPSMSMDAVDPTGLGEFGASFEDVFYYMPENSCIYGMEWPNPYI 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3928387 3930131 - Cp4.1LG01g06810.1 Cpe01g00672 461985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00672 214 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Cpe01g00672 214 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Cpe01g00672 214 CDD homeodomain 56 112 IPR001356 GO:0003677
Cpe01g00672 214 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Cpe01g00672 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 10 213 - -
Cpe01g00672 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 10 213 IPR045224 GO:0003700
Cpe01g00672 214 Gene3D - 48 120 - -
Cpe01g00672 214 Coils Coil 103 130 - -
Cpe01g00672 214 Coils Coil 134 158 - -
Cpe01g00672 214 SMART HOX_1 54 115 IPR001356 GO:0003677
Cpe01g00672 214 MobiDBLite consensus disorder prediction 158 179 - -
Cpe01g00672 214 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Cpe01g00672 214 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Cpe01g00672 214 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00672 Cpe-Chr1:3928387 Cpe13g00908 Cpe-Chr13:7748511 6.02E-25 dispersed
Cpe19g00797 Cpe-Chr19:6020182 Cpe01g00672 Cpe-Chr1:3928387 6.45E-19 dispersed
Cpe01g00672 Cpe-Chr1:3928387 Cpe20g00203 Cpe-Chr20:1171178 5.06E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48776 PF00046 Homeodomain 6.60E-17 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00672 K09338 - csv:101221080 311.227