Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe01g00678 | ATGGCCGGTTTTTACCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACTACCACCACCACCACCATCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATATGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGTTGCCAAGACTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCATGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGGGGAATTTGCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACAAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCGCCCATCAGCACCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGGTACGCAATTTTTTCTTCCCCCAACGTCTTAA | 807 | 54.4 | MAGFYPLGGGREPNYHLPTTTTTTITDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNTAASSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPPNSASPDGGALLITAPSTTMELPPISTALLDPPPPYPAPLNTYVAAGTQFFLPPTS | 268 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 3961148 | 3963029 | + | Cp4.1LG01g06910.1 | Cpe01g00678 | 461991 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe01g00678 | 268 | MobiDBLite | consensus disorder prediction | 193 | 224 | - | - | |
| Cpe01g00678 | 268 | PANTHER | PROTEIN LATERAL ROOT PRIMORDIUM 1 | 1 | 264 | IPR007818 | GO:0003700|GO:0006355 | |
| Cpe01g00678 | 268 | PANTHER | PROTEIN SHORT INTERNODES | 1 | 264 | - | - | |
| Cpe01g00678 | 268 | MobiDBLite | consensus disorder prediction | 125 | 148 | - | - | |
| Cpe01g00678 | 268 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 82 | 124 | IPR006510 | - | |
| Cpe01g00678 | 268 | Pfam | Domain of unknown function (DUF702) | 81 | 202 | - | - | |
| Cpe01g00678 | 268 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 154 | 201 | IPR006511 | - | |
| Cpe01g00678 | 268 | MobiDBLite | consensus disorder prediction | 203 | 217 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe01g00678 | Cpe-Chr1:3961148 | Cpe11g00233 | Cpe-Chr11:1258703 | 1.24E-62 | dispersed | |
| Cpe01g00678 | Cpe-Chr1:3961148 | Cpe10g00646 | Cpe-Chr10:3722467 | 8.26E-35 | wgd | |
| Cpe01g00678 | Cpe-Chr1:3961148 | Cpe14g00546 | Cpe-Chr14:3454778 | 1.46E-124 | wgd | |
| Cpe01g00678 | Cpe-Chr1:3961148 | Cpe19g00837 | Cpe-Chr19:6224497 | 1.84E-65 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48778 | PF05142 | DUF702 | 1.90E-51 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe01g00678 | - | - | bhj:120073083 | 380.178 |