Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00683 ATGTCAACACCTGTCCAGCCACCAAAAGGAATTAAGTCAGCCGGGAAACATTATTACTCAATGTGGCAAACTCTGTTTGAAATCGATACTAAGTATGTCTCAATCAAGCCCATTGGACGAGGATCTTACGGGGTGGTGTGTTCTTCTACCAACCAACAGACCAACGAGAAAGTGGCTATCAAGAAGATTAAAAATGTGTTTGAGAATCGCTTCGAGGCATTGAGAACGCTTATGGAGATGAAGCTTTTGAGGCACATAAGACATGAGAACGTGATTGGTTTGAAAGATGTGATGATGCCCGTGCATAAAAATAGTTTTAAGGATGTGTATTTAGTTTACGAGCTCATGAACACTGATCTTGATCACATTATCAGATCGTCTCAGCCCCTTTCAAATAATCATTGCAAGTATTTCATGTATCAGTTGCTTTCTGGCTTGCAGTATCTTCATTCAACCAACATTCTTCATCGAGACTTGAAGCCCGGGAACCTCCTCGTCAATGCTAATTGTGATCTGAAGATTTGTGATTTCGGGTTAGCACGAACGAGCAAAGGCCAGAACCAAGCCATGACTGAGTACGTTGTTACTCGCTGGTATCGTGCACCAGAGCTTCTCCTATCCTGTAAGAGCTATGGGACTTCCATTGATGTGTGGTCGGTGGGATGCATCTTTGCTGAGATTTTGGGTCGGACACCTATCTTCCCTGGGACAAATTGCCTCAACCAACTAGAGTTAATCATCGAAATTCTCGGTAGTCCAAAGGAAGCAGATATCGAGTTTATTGATAACCTAAAGTCCATAAAGTTCATCAAAGCTATGCCTTTCTCTAAAGGGGTACAATTTTCAGATCAATATCCACAAGCTCAACCTTTAGCTTTAGACTTGCTGCAGAAGATGCTTGTGTTTGACCCGAGGAAGAGAATTACCGCTAATGAAGCACTTCAACATCCATATATGTCCGAGCTATACGACACAAAATTCAATTCTACAAATGAGGTTCCCTTCAGTCTCGACATCGACGAATGA 1026 42.2 MSTPVQPPKGIKSAGKHYYSMWQTLFEIDTKYVSIKPIGRGSYGVVCSSTNQQTNEKVAIKKIKNVFENRFEALRTLMEMKLLRHIRHENVIGLKDVMMPVHKNSFKDVYLVYELMNTDLDHIIRSSQPLSNNHCKYFMYQLLSGLQYLHSTNILHRDLKPGNLLVNANCDLKICDFGLARTSKGQNQAMTEYVVTRWYRAPELLLSCKSYGTSIDVWSVGCIFAEILGRTPIFPGTNCLNQLELIIEILGSPKEADIEFIDNLKSIKFIKAMPFSKGVQFSDQYPQAQPLALDLLQKMLVFDPRKRITANEALQHPYMSELYDTKFNSTNEVPFSLDIDE 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3979721 3980919 + Cp4.1LG01g07000.1 Cpe01g00683 461996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00683 341 SUPERFAMILY Protein kinase-like (PK-like) 24 324 IPR011009 -
Cpe01g00683 341 Gene3D Phosphorylase Kinase; domain 1 19 115 - -
Cpe01g00683 341 Pfam Protein kinase domain 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00683 341 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Cpe01g00683 341 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 341 - -
Cpe01g00683 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cpe01g00683 341 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00683 341 Gene3D Transferase(Phosphotransferase) domain 1 116 336 - -
Cpe01g00683 341 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00683 341 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00683 Cpe-Chr1:3979721 Cpe14g00538 Cpe-Chr14:3395247 0 dispersed
Cpe01g00683 Cpe-Chr1:3979721 Cpe01g00690 Cpe-Chr1:4004960 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62124 PF00069 Pkinase 2.00E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00683 K20537 K20535 csv:101203896 560.451