Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00690 ATGGCAACACCCGTCCAGCCACCCAAAGGATTTAAGTCAGCTGGGAAACATTATTACTCGATGTGGCAAACTCTATTTGAAATCGATACTAAGTATGTTCCAATCAAGCCCATTGGACGAGGATCTTACGGTGTGGTGTGTTCTTCTATCAACCAACAAACCAACGAGGAGGTGGCTATCAAGAAGATTAAAAATGTGTTTGAGAATCGCTTCGAGGCATTGAGAACGCTTAGGGAGATGAAGCTTTTGAGGCACATAAAACATGAGAACGTGATTGCTCTGAAGGATGTGATGATGCCCGTGCATAGAAATAGCTTTAAGGATGTGTATTTGGTTTACGAGCTCATGAACACGGATCTTGATCGGATTATCAGATCGTCTCAGCCCCTTTCAAATAATCATTGCAAGTGTTTGATGTATCAGTTGCTTTCCGGCTTGCAGTATCTTCATTCAACCAACATTCTTCATCGGGACTTGAAGCCCGGGAACCTCCTCGTCAATGCTAATTGTGATCTGAAGATTTGTGATTTCGGGTTAGCACGAACGAGCAAAGGCCAAGACCAAGCCATGACTGAGTACGTTGTTACTCGCTGGTATCGTGCACCAGAGCTCCTCCTATCCTGTAAGAGCTATGGGACTTCTATTGATGTGTGGTCTGTGGGATGCATCTTTGCTGAGATTTTGGGTCGGACACCGATCTTCCCTGGGACGAATTGCCTCAACCAACTAGAGTTAATCATCGAAGTTCTCGGTAGTCCAAAGGAAGCAGATATCGAGTTTATTGATAACCTAAAGTCCGTACAGTTTATCAAAGCTATGCCTTACTCAAAAGGTGTACAATTTTCAGATCAATATCCACGAGCTGAACCTTTAGCTTTGGACTTGCTGCAGAAGATGCTTGTGTTTGACCCGAGGAAGAGAATTACTATTAATGAAGCAGTTCAACACCCATACATGTCCGAGCTATACGATACAGCATTCAATCCTACTGATGAAGTTCCCCTCAGTCTCGACATCGACGAATCACTTGATGAGCATGAGATTAGAGAAATGATGTTGACTGAGATGCTTTATTATCATCCTGAAGCTGCTACAACGTAG 1101 43.51 MATPVQPPKGFKSAGKHYYSMWQTLFEIDTKYVPIKPIGRGSYGVVCSSINQQTNEEVAIKKIKNVFENRFEALRTLREMKLLRHIKHENVIALKDVMMPVHRNSFKDVYLVYELMNTDLDRIIRSSQPLSNNHCKCLMYQLLSGLQYLHSTNILHRDLKPGNLLVNANCDLKICDFGLARTSKGQDQAMTEYVVTRWYRAPELLLSCKSYGTSIDVWSVGCIFAEILGRTPIFPGTNCLNQLELIIEVLGSPKEADIEFIDNLKSVQFIKAMPYSKGVQFSDQYPRAEPLALDLLQKMLVFDPRKRITINEAVQHPYMSELYDTAFNPTDEVPLSLDIDESLDEHEIREMMLTEMLYYHPEAATT 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4004960 4006247 + Cp4.1LG01g06990.1 Cpe01g00690 462003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00690 366 Gene3D Transferase(Phosphotransferase) domain 1 116 345 - -
Cpe01g00690 366 Gene3D Phosphorylase Kinase; domain 1 19 350 - -
Cpe01g00690 366 Pfam Protein kinase domain 33 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00690 366 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Cpe01g00690 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Cpe01g00690 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cpe01g00690 366 SMART serkin_6 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00690 366 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 364 - -
Cpe01g00690 366 SUPERFAMILY Protein kinase-like (PK-like) 24 325 IPR011009 -
Cpe01g00690 366 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cpe01g00690 366 ProSiteProfiles Protein kinase domain profile. 32 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00690 Cpe-Chr1:4004960 Cpe11g00217 Cpe-Chr11:1168178 0 dispersed
Cpe01g00683 Cpe-Chr1:3979721 Cpe01g00690 Cpe-Chr1:4004960 0 proximal
Cpe01g00690 Cpe-Chr1:4004960 Cpe14g00538 Cpe-Chr14:3395247 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62125 PF00069 Pkinase 3.30E-73 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00690 K20537 K20535 csv:101203896 603.979