Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00702 ATGAGAACACTTTGTGACTCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAAGCCGCCCTTTGCCGCTCTTGTGATGAGAAGGTCCATCTGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTCCCCCGCTGCGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGGTCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTAAGGCAGAGGTTTGAGTTTCCAGGAGATAAACCTATAAACCTTGATGCGCCGTCTCCACATTCCAAGGTTCCCAATAATATTGGTAGAGGGCATAACCAGACACTGCCCCATAAAGTCGCCGCGGAAGACAACCAGCGAAATCATCACCGATTATCGCCTGTTCGGGAGGCTAATGACGATGGTCATGCAGAGACTGATACGAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGTTCAACTGCTTTTCCTTATCTCTTCCTCCATAGTGTCAACTGTTTGTTTGGAGATTCCAAAACATGGAATGGTTCTAAATCCCTAA 639 46.17 MRTLCDSCESAAAIVFCAADEAALCRSCDEKVHLCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHKRYLLLRQRFEFPGDKPINLDAPSPHSKVPNNIGRGHNQTLPHKVAAEDNQRNHHRLSPVREANDDGHAETDTKMIDLNMKPQRVHGQAANNQVQLLFLISSSIVSTVCLEIPKHGMVLNP 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4064921 4067724 - Cp4.1LG01g06700.1 Cpe01g00702 462015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00702 212 CDD Bbox1_BBX-like 4 47 - -
Cpe01g00702 212 PANTHER B-BOX ZINC FINGER PROTEIN 19 1 188 - -
Cpe01g00702 212 SMART bboxneu5 51 96 IPR000315 GO:0008270
Cpe01g00702 212 SMART bboxneu5 1 47 IPR000315 GO:0008270
Cpe01g00702 212 MobiDBLite consensus disorder prediction 138 159 - -
Cpe01g00702 212 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cpe01g00702 212 CDD Bbox1_BBX-like 56 96 - -
Cpe01g00702 212 Gene3D Classic Zinc Finger 2 95 - -
Cpe01g00702 212 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 188 - -
Cpe01g00702 212 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Cpe01g00702 212 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Cpe01g00702 212 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00702 Cpe-Chr1:4064921 Cpe10g00649 Cpe-Chr10:3738125 3.48E-72 dispersed
Cpe01g00702 Cpe-Chr1:4064921 Cpe14g00516 Cpe-Chr14:3264555 1.87E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48782 PF00643 zf-B_box 7.60E-07 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00702 - - csv:101208899 362.073