Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00718 ATGAACGGCCACAAGCGAAACCCCACCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCAGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTACAAGAATGCGTGTCGGAGTTCATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATACAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGCGGGAAATCGGCCAATTCCGTGATGGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCAAAAGAGTTACCATATAATCGATGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGGCTCATCTTCAACAGAGCTCTGGTTGGTGA 699 49.07 MNGHKRNPTTATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVMDFQNLNSGFYSLGAHNHNHNHHQGNQKSYHIIDGVGFGENLRGFNLSAVHENEGNRGRAMAAHLQQSSGW 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4179469 4180167 - Cp4.1LG01g09500.1 Cpe01g00718 462031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00718 232 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 36 100 IPR003958 -
Cpe01g00718 232 PRINTS CCAAT-binding transcription factor subunit A signature 64 82 - -
Cpe01g00718 232 PRINTS CCAAT-binding transcription factor subunit A signature 83 101 - -
Cpe01g00718 232 PRINTS CCAAT-binding transcription factor subunit A signature 102 120 - -
Cpe01g00718 232 Coils Coil 112 132 - -
Cpe01g00718 232 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 15 191 - -
Cpe01g00718 232 MobiDBLite consensus disorder prediction 126 145 - -
Cpe01g00718 232 SUPERFAMILY Histone-fold 33 138 IPR009072 GO:0046982
Cpe01g00718 232 Gene3D Histone, subunit A 23 146 IPR009072 GO:0046982
Cpe01g00718 232 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 191 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cpe01g00718 232 MobiDBLite consensus disorder prediction 1 34 - -
Cpe01g00718 232 ProSitePatterns NF-YB/HAP3 subunit signature. 67 83 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00718 Cpe-Chr1:4179469 Cpe16g00379 Cpe-Chr16:5421766 3.47E-62 dispersed
Cpe01g00718 Cpe-Chr1:4179469 Cpe14g00570 Cpe-Chr14:3617342 1.23E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48784 PF00808 CBFD_NFYB_HMF 6.00E-27 CL0012 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00718 K08065 - csv:116406241 364.77