Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00721 ATGGGATTGTACGAACCTGTCAACAAGCTTGGAATGTGGGGGAACACTTTTAGAAGCAATGCCAATTTAGATGTACCATCATCAACTCTCATTATGGAAGCTGATACCAAACTCGAGAATCAATCAGATGATGCTTCACCTGGTTCGTTGGGAGATCCTCACATTTATGATCAAGAAGATACTAAACGTATTGATAAGATTCAAAGACGGCTCGCCCAAAATCGGGAAGCAGCCCGCAAAAGTCGCATACGAAAGAAGGCCTATATTAAGCAACTGGAAACGAGCCGTTTGAGACTTATTCGATTAGAGCAAGAGCTTGAAAAAGCAAGGCAACAAGATCTGTTTGCTGGATCTCGATTTGATCATTATCAGATGGGCTTATCTGGAACCACAAATTCTGTCATCTCTGCATTTGAATCAGAGTACGAGCAATGGGTAGAAGAGCAGAACAAGCAGATTTGTGATCTAAGGAATGTTGTGCATGCTGATATCACTGATATTGAGCTTCGAATACTTGTAGAAAATGCAATGAGACACTACTTCAAATTTTTTCACATGAAAGCCAAAGCTGCAAAAACCGATGTTTTTTACATTATGTCAGGCATGTGGAAAACTTCAGCCGAAAGACTTTTCTTATGGATAGGTGGAATTCGCCCTTCAGAACTTCTCAAGGTCTTGATACCTCAACTGGAGACACTGACTGATCAACAAATTTCGGAAACTAGTAGCCTTAGGAAATCATGTCTACAAGCAGAAGATGCTTTAAGACAAGGTATGGAAAAACTACAACAAAACCTATTTGAGAGCATAGTGGCTAGTCAGATCGATGAAGGAAGTTATCCCCTACAGATGACCGCTGCAATCGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGTAACATTCAATCTCAAGTTCATGAACTGTGTTATTTTAACATTCTCTTTGGTCATCTTAACCTTCCATGGCCCAAGTCCAAGCCCTGATGATATCTACCTCTTAATGTCTCCTAAAGTTGGCCTTAGGGCAGCTTTGGCTTCCTAG 1047 40.69 MGLYEPVNKLGMWGNTFRSNANLDVPSSTLIMEADTKLENQSDDASPGSLGDPHIYDQEDTKRIDKIQRRLAQNREAARKSRIRKKAYIKQLETSRLRLIRLEQELEKARQQDLFAGSRFDHYQMGLSGTTNSVISAFESEYEQWVEEQNKQICDLRNVVHADITDIELRILVENAMRHYFKFFHMKAKAAKTDVFYIMSGMWKTSAERLFLWIGGIRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESIVASQIDEGSYPLQMTAAIERLEALISFVNQVTFNLKFMNCVILTFSLVILTFHGPSPSPDDIYLLMSPKVGLRAALAS 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4193178 4198613 - Cp4.1LG01g09510.1 Cpe01g00721 462034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00721 348 PANTHER TRANSCRIPTION FACTOR TGA9 1 301 - -
Cpe01g00721 348 Pfam Seed dormancy control 152 227 IPR025422 GO:0006351|GO:0043565
Cpe01g00721 348 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 69 84 IPR004827 GO:0003700|GO:0006355
Cpe01g00721 348 PANTHER TRANSCRIPTION FACTOR TGA1 1 301 - -
Cpe01g00721 348 SMART brlzneu 62 129 IPR004827 GO:0003700|GO:0006355
Cpe01g00721 348 ProSiteProfiles DOG1 domain profile. 135 348 IPR025422 GO:0006351|GO:0043565
Cpe01g00721 348 SUPERFAMILY Leucine zipper domain 67 107 IPR046347 GO:0003700|GO:0006355
Cpe01g00721 348 Gene3D - 65 115 - -
Cpe01g00721 348 Pfam bZIP transcription factor 65 94 IPR004827 GO:0003700|GO:0006355
Cpe01g00721 348 Coils Coil 85 112 - -
Cpe01g00721 348 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 64 108 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00721 Cpe-Chr1:4193178 Cpe01g02608 Cpe-Chr1:21130185 8.08E-89 dispersed
Cpe01g00721 Cpe-Chr1:4193178 Cpe14g00573 Cpe-Chr14:3635226 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48785 PF14144 DOG1 3.80E-27 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00721 K14431 - csv:116401613 498.819