Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00738 ATGATGGTGGAGTTCCATGGAGAAATCCCAGAAGACTCTCACGATGGAGACGAAGAACAGGAAGAGGAAATTAGCTACGATGATCTTAAGAAACGAATGTGGAAAGACAGACAGAGGTTGAAGAAGATGAAGGAGAATCGTGATCATGAAGAGTTTGAATGGGCGGCCAGAGAAGAAGCTTCTCGCCGGAAGAAAATGTCCAGAGCTCAAGATTCGATTCTCAAGTACATGGATAAGATAATGGAGTCTTGTAAGGCACAAGGGTTTGTTTATGGGATCGTGCCGGAAAAGGGTAAACCGATCACCGGCTCTTCCGAGAGCCTCCGTGAGTGGTGGCAGGACAAGGTTCGGTTCGAACAGGATGCTCCACTGAACATCGCGAATTTCCTTCCGAGAGTGATCGAAGAAGCGGGGCTCGATCCCAAATCGTTTCTGCACCTACTCCAAGAATTGCAGGACACGACTTTAGGGTCGATTCTGTCGGCTCTGATGCAGCACTGTATTCCGCCGCAGAGGAAATTCCCGTTGGACAAGGGTCTGGCGCCGCCGTGGTGGCCGACGGGGAAGGAGCTTTGGTGGGGCGAACAAGGCGTCGCCGGTGGGCAGGGCGTTCCACCATATAAAAAGCCTCATGATCTCAAGAAGTCCTGGAAAATCAGTGTCCTTGCGGCGGTGATTAAACACATGTCTCTTGATCTGGACAACATGAGGAAATTGGTTCGACAATCGAAGAATTTACAGGCGAAAATGACGGCGAAAGAGACGATTACTTGGACTAAAGTCGTGAATCAAGAAGAAGCTCTCTTGCAATTGACCAAAAACAGCCTCAAAATAACATCCGACGAAGAAGATCAAGAACAACACGACCAAAACAGAGGACACGAAAACAGGGCAGAACAAGGCACCGGCGGGATTATTACGAAACGGAAGTGCGAATTCGAACGAGAAGCCACAGCTAATTCAGCGGTGTATGCTTGCCAGAACGAATGGTGCCCACAGAGCGAGGCGCCAAAGGGGTTCGCCGACAAGAACACGAGAACAGAGCACGAGACGCAGTGCGTTTACAGAGCCGACGGCATGGGTCAATTTTCTAACGAGCAGTCGATCGACACGCATTTGATGAGCGTGGTGGAGTGGATGAACTGGGAGCTGTCGAGGGCAGAGCCGAGCAGCAGCGAGTCGAGGATCGACGACGGCGGATATGGGTCGGGTAGCAGCACAGTGGATGGCAGTGGGTATTGGAAGGGCAGCATCGGAGAGGTAGGGGTGGATGGGTCGGGTAGCAGCACGGTGGAGGATTATGGCAGTGGGTATTGGAAGGGCGGGATTGGAGAGGCAACGGTGGATGGGTCGGGTAGCAGCACGGTGGATGATTATGGGAGTGGGTTTTGGAAGGGCGGCATCGGAGAGGCAGCAGTGGACGAGGCGTTTGAGATGCATAGAGAGAGTATGGATTTGAATGCGAGTCCGGCGGACGATTTGCAATGCCAACAAGATGCAACTTCGATTTGGGATTTGAGATATGAATGGAGTGAAGAATAA 1542 51.69 MMVEFHGEIPEDSHDGDEEQEEEISYDDLKKRMWKDRQRLKKMKENRDHEEFEWAAREEASRRKKMSRAQDSILKYMDKIMESCKAQGFVYGIVPEKGKPITGSSESLREWWQDKVRFEQDAPLNIANFLPRVIEEAGLDPKSFLHLLQELQDTTLGSILSALMQHCIPPQRKFPLDKGLAPPWWPTGKELWWGEQGVAGGQGVPPYKKPHDLKKSWKISVLAAVIKHMSLDLDNMRKLVRQSKNLQAKMTAKETITWTKVVNQEEALLQLTKNSLKITSDEEDQEQHDQNRGHENRAEQGTGGIITKRKCEFEREATANSAVYACQNEWCPQSEAPKGFADKNTRTEHETQCVYRADGMGQFSNEQSIDTHLMSVVEWMNWELSRAEPSSSESRIDDGGYGSGSSTVDGSGYWKGSIGEVGVDGSGSSTVEDYGSGYWKGGIGEATVDGSGSSTVDDYGSGFWKGGIGEAAVDEAFEMHRESMDLNASPADDLQCQQDATSIWDLRYEWSEE 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4294084 4295625 - Cp4.1LG01g09350.1 Cpe01g00738 462051

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00738 513 MobiDBLite consensus disorder prediction 279 296 - -
Cpe01g00738 513 Pfam Ethylene insensitive 3 27 266 IPR006957 GO:0005634
Cpe01g00738 513 MobiDBLite consensus disorder prediction 1 25 - -
Cpe01g00738 513 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 13 509 - -
Cpe01g00738 513 Gene3D - 138 276 IPR023278 GO:0003700|GO:0005634
Cpe01g00738 513 Gene3D - 55 132 IPR023278 GO:0003700|GO:0005634
Cpe01g00738 513 Coils Coil 26 46 - -
Cpe01g00738 513 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 13 509 IPR006957 GO:0005634
Cpe01g00738 513 SUPERFAMILY DNA-binding domain of EIN3-like 145 269 IPR023278 GO:0003700|GO:0005634
Cpe01g00738 513 MobiDBLite consensus disorder prediction 279 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00738 K14514 EIN3; ethylene-insensitive protein 3 - csv:116406095 673.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00738 Cpe-Chr1:4294084 Cpe04g00955 Cpe-Chr4:8670547 3.92E-37 dispersed
Cpe01g00738 Cpe-Chr1:4294084 Cpe14g00591 Cpe-Chr14:3773072 8.75E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe01g00738 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 2.7e-74 276.9
Cpe04g00955 CCT 51 182 EIL Transcription Factor Family AT1G73730 64.9 1.2e-42 171.8
Cpe18g00129 CCT 36 179 EIL Transcription Factor Family AT1G73730 61.0 2.7e-42 170.6
Cpe01g00738 . 18 355 EIL Transcription Factor Family AT5G10120 57.6 5.2e-103 372.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48786 PF04873 EIN3 1.50E-106 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00738 Cpe_Chr01 FPKM 7.952111 8.702861 17.72378 17.004301 25.964504 27.061398 23.826111 15.245599 13.712877 13.12724