Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00748 ATGGGCAGCGGCTTCACTTCACGCAGTAGCACCACTCACACGAATTGGTTTTCAGTCACGAATCTCGAGGATCATTCGCCTCTTCTCCATCTCCTTAGATATAGCATAGCAATGGCTCTTGTCCTCTATCTTACAATTCTACTCCTGGCTTGCTTTCATAATTTTGCGCTGTCTGATTATCAAGGTGATGCTCTGTTTTCATTGAGACGCGCATTGAATGCAACAGAAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGACCAGTGTTATATGTAATGGAAACAATGTGATCTCTGTATCCTTGTCAGCTATGGGCTTTACTGGAACTTTGTCCCCGAAAATTGGAGTTCTCAAATCACTTTCAACGCTGATTTTGCAGGGGAATCACATAACTGGAGAGATACCAAAGGATTTTGGAAACTTGACAAATTTGGTCAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCATATACCATCGTCCCTGGGTAATCTTCAGAAACTACAGTTCCTAACTCTGAGTCATAATCGTCTAACTGGGACTATTCCTGAGTCACTCTCAAGCATTCCTAGCTTGATTAGTCTGCTTCTTGACTCAAATGATCTCACGGGCCCAATTCCGGAGCAGTTATTTCAAACTTCAAAATTCAACTTTTCTGGAAACAAGTTAGATTGTAGCGGGAAGTTTCTGCATGCCTGTGCTTCAGACAGTTCAAACTCAGGTTCTTCGAATAAACCTAAGGTTGGCCTTATTGTTGGAATTATAGCTGGGTTTACTGTTGCTCTCCTTTTGGTCGGTGTATTATTTTTCTTGTGCAAGGGTAGATATAAAGGCTACAAGCGCGAAGAGTTCGTAGATGTTGCAGAACTGCAGCATGCTACAGACAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGTTTGCCGATGGCACCAAAGTTGCAGTGAAACGGTTGACTGATTATGAAAGTCCAGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGCGTAGCTGTTCATAGAAATCTGTTGCGGCTGATTGGGTTCTGTACGACTCAGACAGAACGCCTATTGGTTAAGAAACTAGAAAGAGAAAAGCGACTCAATGCTATCGTAGATCGGAATCTAAGTAACTACAACATTCAAGAGGTGGAGATGATGATCCAAGTTGCATTACTATGCACACAGCCATGTTCGGATGACCGTCCAGCAATGTCGCAAGTCGTTCGAATGCTTGAAGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTTACTCGCAGACAAGAGTATGAGAGACTGCAGAGAAGATTTGAATGGGGAGAAGATTCAATTCATAGACAGGATGCAATCGAATTGTCTGCTTCCCTTCAGGCTGCAGCACCTCTCTCTAAATTTCTCATCTGCTCCTTCCCCACAGGTCAGGCACTCATTGAATTAAAGAAAGCATTGAATGCAACAGAGAGTCAGCTCACAAGTTGGAACGCAGATCATATCAATCCATGCAGTAGTTGGTCCAATATTATATGTAACGGAAACAATGTGACTAAGATATTATTGTCAACAATGGGATTGACTGGAACCATGTCTCCGAGTATTGTTGTTCTAAAATCTCTTTCAACTCTGAACTTGAAGGGAAATTACATAACTGGAGAGATACCAGAGGATTTTGGAAACCTGACAAATTTGGTCACCTTGGACCTGGAAAATAACAGCCTAACTGGTCGAATACCATCATCCCTTGGTAATCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCATCTAGCTGGGACTATTCCTGAATCATTTTCGACCCTTCCTAGCTTGATCAATCTTTTTCTTGATTCAAATAATCTCAATGGCCAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAAGTATGTGGAACTTTTGAATGCTATCAAGGTCAAAAAATTGGTAAGGGAGAAGCGACTCACTGCTATTGTCGACGAAAACCTGAATAACTATGATATTAGAGAGGTGGAAATGATGACCCAAGTAGCGCTACTGTGCACGCAGCAATCTTCGGTTGACCGACCGACAATGTCACAGGTCACTCGGATGCTGGAAGGCGAGGGGCTTGCAGAAAGGTGGGAAGAATGGCAGCATTTAGAGGTTACTCGCAAACAAGACTTTGAGAGAATACTGAGAAGATTTGCGTTGGGGGATGATTCCATATATAAACAGGAACCTATCCAGTTGTCTGGTGGAAGATGA 2310 42.55 MGSGFTSRSSTTHTNWFSVTNLEDHSPLLHLLRYSIAMALVLYLTILLLACFHNFALSDYQGDALFSLRRALNATENQLTDWNPNQVNPCTWTSVICNGNNVISVSLSAMGFTGTLSPKIGVLKSLSTLILQGNHITGEIPKDFGNLTNLVSLDLGNNSLTGHIPSSLGNLQKLQFLTLSHNRLTGTIPESLSSIPSLISLLLDSNDLTGPIPEQLFQTSKFNFSGNKLDCSGKFLHACASDSSNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLCKGRYKGYKREEFVDVAELQHATDNFSEKNVLGQGGFGKVYKGVFADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVKKLEREKRLNAIVDRNLSNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIELSASLQAAAPLSKFLICSFPTGQALIELKKALNATESQLTSWNADHINPCSSWSNIICNGNNVTKILLSTMGLTGTMSPSIVVLKSLSTLNLKGNYITGEIPEDFGNLTNLVTLDLENNSLTGRIPSSLGNLKKLQFLTLSQNHLAGTIPESFSTLPSLINLFLDSNNLNGQIPEQLFQVSKFKYVELLNAIKVKKLVREKRLTAIVDENLNNYDIREVEMMTQVALLCTQQSSVDRPTMSQVTRMLEGEGLAERWEEWQHLEVTRKQDFERILRRFALGDDSIYKQEPIQLSGGR 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4335235 4356418 - Cp4.1LG01g09220.1 Cpe01g00748 462061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00748 769 SUPERFAMILY Protein kinase-like (PK-like) 291 383 IPR011009 -
Cpe01g00748 769 Gene3D Ribonuclease Inhibitor 59 254 IPR032675 -
Cpe01g00748 769 Coils Coil 498 518 - -
Cpe01g00748 769 Pfam Leucine rich repeat N-terminal domain 495 532 IPR013210 -
Cpe01g00748 769 Pfam Leucine rich repeat N-terminal domain 59 98 IPR013210 -
Cpe01g00748 769 SMART LRR_typ_2 147 170 IPR003591 -
Cpe01g00748 769 SMART LRR_typ_2 171 194 IPR003591 -
Cpe01g00748 769 SMART LRR_typ_2 629 653 IPR003591 -
Cpe01g00748 769 SMART LRR_typ_2 123 146 IPR003591 -
Cpe01g00748 769 SMART LRR_typ_2 581 605 IPR003591 -
Cpe01g00748 769 SMART LRR_typ_2 557 580 IPR003591 -
Cpe01g00748 769 SMART LRR_typ_2 195 219 IPR003591 -
Cpe01g00748 769 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 496 659 - -
Cpe01g00748 769 Pfam Leucine rich repeat 559 618 IPR001611 GO:0005515
Cpe01g00748 769 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Cpe01g00748 769 SUPERFAMILY L domain-like 490 661 - -
Cpe01g00748 769 Gene3D Phosphorylase Kinase; domain 1 281 378 - -
Cpe01g00748 769 PANTHER LRR RECEPTOR-LIKE KINASE 666 769 - -
Cpe01g00748 769 PANTHER LRR RECEPTOR-LIKE KINASE 40 376 - -
Cpe01g00748 769 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Cpe01g00748 769 Gene3D Ribonuclease Inhibitor 494 674 IPR032675 -
Cpe01g00748 769 Pfam Protein tyrosine and serine/threonine kinase 306 408 IPR001245 GO:0004672|GO:0006468
Cpe01g00748 769 SUPERFAMILY L domain-like 61 232 - -
Cpe01g00748 769 SMART tyrkin_6 303 478 IPR020635 GO:0004713|GO:0006468
Cpe01g00748 769 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 376 476 - -
Cpe01g00748 769 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 666 769 - -
Cpe01g00748 769 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 40 376 - -
Cpe01g00748 769 PANTHER LRR RECEPTOR-LIKE KINASE 376 476 - -
Cpe01g00748 769 PANTHER LRR RECEPTOR-LIKE KINASE 496 659 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00748 Cpe-Chr1:4335235 Cpe07g00017 Cpe-Chr7:106748 6.57E-16 dispersed
Cpe16g00120 Cpe-Chr16:2601023 Cpe01g00748 Cpe-Chr1:4335235 1.79E-19 transposed
Cpe01g00748 Cpe-Chr1:4335235 Cpe14g00602 Cpe-Chr14:3825757 6.78E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62127 PF07714 PK_Tyr_Ser-Thr 5.80E-12 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00748 - - csv:116403405 536.184