Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00763 ATGGATTTCGAGGATCACGAAGAAGAAGAAGAAGACATGGAAATGGAAGCTCCAACAAACTACGACAAACCACTTCTCCAAACCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCACTTTCCCGCCTCAACAAAACCCCATCTCCGCTCCACTCCAACCCCCCTCCTCCCCCCCTCTACAAAGAGTGCTTAAAAAACCACGCCGTCGCCATCGGTGGCCACTCCATCGACGGCTGCGGCGAGTTCATGCCCGCCGGCCCAAACGGCTCTCTCGACGCCCTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAAGACATTACCACCAACGACGACAACGGAGAATCACCACCGTTCATCTTATCGAACCCACCACCAACCGCCCAGTTCGTTCCCTACTGGCGTGCTCCAGCTGGCTACCTCCACGTGGCACCCCAACGACGAATGCTGGCACTCCCATCGCCTTCAAGTGGAGACGGCGGATGCAGAAAGCGGGTAAGGACAAAATTCACGGAGGAGCAGAAGGAAAAGATGCTGGTGATGGCGGAGAAGCTGGATTGGCGCATTCAAAAGAACGATGAAGCGGCGGTGATGGAATTCTGCAACGAAATCGGGGTGAAACGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGAGTCTGAAAACAACAAATTCTCGTAA 705 54.75 MDFEDHEEEEEDMEMEAPTNYDKPLLQTPPPPPPPPPPLSRLNKTPSPLHSNPPPPPLYKECLKNHAVAIGGHSIDGCGEFMPAGPNGSLDALKCAACNCHRNFHRKDITTNDDNGESPPFILSNPPPTAQFVPYWRAPAGYLHVAPQRRMLALPSPSSGDGGCRKRVRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRKESENNKFS 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4457644 4458348 - Cp4.1LG01g09000.1 Cpe01g00763 462076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00763 234 Gene3D - 155 226 - -
Cpe01g00763 234 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 226 - -
Cpe01g00763 234 SUPERFAMILY Formin homology 2 domain (FH2 domain) 30 104 - -
Cpe01g00763 234 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 1 57 226 - -
Cpe01g00763 234 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 165 222 IPR006455 -
Cpe01g00763 234 MobiDBLite consensus disorder prediction 1 58 - -
Cpe01g00763 234 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 59 108 IPR006456 -
Cpe01g00763 234 MobiDBLite consensus disorder prediction 24 58 - -
Cpe01g00763 234 MobiDBLite consensus disorder prediction 1 16 - -
Cpe01g00763 234 Pfam ZF-HD protein dimerisation region 58 109 IPR006456 -
Cpe01g00763 234 SUPERFAMILY Homeodomain-like 156 226 IPR009057 -
Cpe01g00763 234 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 59 108 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00763 - - - cpep:111809080 457.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00763 Cpe-Chr1:4457644 Cpe10g00542 Cpe-Chr10:3189658 1.09E-72 dispersed
Cpe07g00186 Cpe-Chr7:1166653 Cpe01g00763 Cpe-Chr1:4457644 7.07E-29 dispersed
Cpe01g00763 Cpe-Chr1:4457644 Cpe19g00746 Cpe-Chr19:5752708 1.19E-72 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe01g01712 . 82 281 ZF-HD Transcription Factor Family AT2G02540 54.4 4.0e-51 199.1
Cpe08g01331 . 70 264 ZF-HD Transcription Factor Family AT2G02540 51.2 4.1e-48 189.1
Cpe11g00465 . 50 233 ZF-HD Transcription Factor Family AT4G24660 55.6 2.7e-52 202.6
Cpe07g00420 . 99 309 ZF-HD Transcription Factor Family AT4G24660 50.7 2.4e-48 189.5
Cpe19g00746 . 48 244 ZF-HD Transcription Factor Family AT4G24660 51.8 3.1e-48 189.1
Cpe01g00763 . 59 223 ZF-HD Transcription Factor Family AT4G24660 54.7 9.0e-48 187.6
Cpe01g02394 . 25 252 ZF-HD Transcription Factor Family AT5G39760 53.8 1.9e-51 200.3
Cpe03g00513 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 6.2e-50 195.3
Cpe13g00949 . 26 253 ZF-HD Transcription Factor Family AT5G39760 56.2 8.1e-50 194.9
Cpe04g00062 . 31 259 ZF-HD Transcription Factor Family AT5G39760 64.5 5.3e-49 192.2
Cpe19g00812 CST 120 322 ZF-HD Transcription Factor Family AT2G18350 56.4 1.8e-52 203.4
Cpe01g02394 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 1.3e-49 193.7
Cpe09g00178 . 1 188 ZF-HD Transcription Factor Family AT1G69600 50.5 3.2e-48 189.1
Cpe13g00949 . 59 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.4e-48 187.6
Cpe03g00513 . 58 250 ZF-HD Transcription Factor Family AT1G69600 50.5 9.7e-45 177.6
Cpe03g00513 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 1.9e-49 193.4
Cpe13g00949 . 9 247 ZF-HD Transcription Factor Family AT5G15210 54.3 4.3e-49 192.2
Cpe04g00062 . 13 284 ZF-HD Transcription Factor Family AT5G15210 50.2 8.3e-45 177.9
Cpe01g01712 . 79 284 ZF-HD Transcription Factor Family AT1G14440 55.2 3.2e-56 216.1
Cpe08g01331 . 67 264 ZF-HD Transcription Factor Family AT1G14440 54.3 2.5e-53 206.5
Cpe03g00513 . 22 265 ZF-HD Transcription Factor Family AT3G28920 57.4 4.9e-57 218.8
Cpe01g02394 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.5 2.4e-56 216.5
Cpe13g00949 . 18 249 ZF-HD Transcription Factor Family AT3G28920 58.3 4.6e-55 212.2
Cpe04g00062 . 23 250 ZF-HD Transcription Factor Family AT3G28920 62.9 5.6e-53 205.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48787 PF04770 ZF-HD_dimer 1.40E-28 No_clan Cpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00763 Cpe_Chr01 FPKM 83.192924 89.013466 81.708748 76.737228 132.379227 140.175613 138.801987 145.029373 142.89415 139.223892