Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00772 ATGGGTTTGGATGATGTTTCTCAAACAAGCTTGGTTTTGGGGTTGGGGATCTCAGAAGCTGCTTCTCCAATTCTTAACAACTTCAAGAACAACAAGAAGAAGAAGAACAACAAAGAGAATCCTACTTCACTTGAGTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCGGGCGATGTTGATCCTCCTCCTCATCATCATCCTCATCATCATCATCATTTGTATCGCCAAGCTTCCCCTCATAGCAGCGCTGTTTGTTCTTCCTTCTCCGGGGGCGGTGGCGGTGGGATTAAAAGGGAGAGAGACCTCAGCAGTGAAGAAGTTGAATTGGAGAGGGTTTGTTGTAGAGTTAGTGATGAAGATGAAGATGGTTGTAATACTAGGAAGAAGCTTAGGCTTTCTAAACAACAATCCGCGCTATTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCCAAACAAAAGCAAACCTTAGCCAGACACCTAAACCTACGCCCAAGACAAGTGGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAAATGAAACAAACAGAAGTAGACTGTGAGTTCTTGAAGAAATGTTGCGAGACCTTGACAAACGAAAATAGAAGACTACAGAAGGAGCTTCAAGAATTGAAGGCACTAAAGCTCGCACACCCGCTGTACATGCACATGCCAGCAGCAACGTTAACCATGTGCCCATCCTGCGAAAGGGTGGGTGGCGTTGGCGTTGGCGTTGGCGATGGCGCTTCCAAACCCAAATTTTCAATGGCTCCCAAGCCCCACTTTTACAACCCCTTCTCCAATCCTTCAGCCGCATGTTAG 828 45.53 MGLDDVSQTSLVLGLGISEAASPILNNFKNNKKKKNNKENPTSLEFEPCALTLGFSGDVDPPPHHHPHHHHHLYRQASPHSSAVCSSFSGGGGGGIKRERDLSSEEVELERVCCRVSDEDEDGCNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTKMKQTEVDCEFLKKCCETLTNENRRLQKELQELKALKLAHPLYMHMPAATLTMCPSCERVGGVGVGVGDGASKPKFSMAPKPHFYNPFSNPSAAC 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4505674 4507837 - Cp4.1LG01g09020.1 Cpe01g00772 462085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00772 275 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Cpe01g00772 275 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Cpe01g00772 275 SUPERFAMILY Homeodomain-like 121 184 IPR009057 -
Cpe01g00772 275 MobiDBLite consensus disorder prediction 58 78 - -
Cpe01g00772 275 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Cpe01g00772 275 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Cpe01g00772 275 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Cpe01g00772 275 CDD homeodomain 127 181 IPR001356 GO:0003677
Cpe01g00772 275 PANTHER - 8 275 - -
Cpe01g00772 275 Coils Coil 189 219 - -
Cpe01g00772 275 Gene3D - 131 181 - -
Cpe01g00772 275 SMART HOX_1 125 187 IPR001356 GO:0003677
Cpe01g00772 275 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 8 275 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00772 Cpe-Chr1:4505674 Cpe10g00508 Cpe-Chr10:2995591 1.58E-102 dispersed
Cpe01g00772 Cpe-Chr1:4505674 Cpe19g00701 Cpe-Chr19:5513364 8.59E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48790 PF00046 Homeodomain 7.00E-16 CL0123 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00772 K09338 - csv:101205848 336.265