Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00772 | ATGGGTTTGGATGATGTTTCTCAAACAAGCTTGGTTTTGGGGTTGGGGATCTCAGAAGCTGCTTCTCCAATTCTTAACAACTTCAAGAACAACAAGAAGAAGAAGAACAACAAAGAGAATCCTACTTCACTTGAGTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCGGGCGATGTTGATCCTCCTCCTCATCATCATCCTCATCATCATCATCATTTGTATCGCCAAGCTTCCCCTCATAGCAGCGCTGTTTGTTCTTCCTTCTCCGGGGGCGGTGGCGGTGGGATTAAAAGGGAGAGAGACCTCAGCAGTGAAGAAGTTGAATTGGAGAGGGTTTGTTGTAGAGTTAGTGATGAAGATGAAGATGGTTGTAATACTAGGAAGAAGCTTAGGCTTTCTAAACAACAATCCGCGCTATTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCCAAACAAAAGCAAACCTTAGCCAGACACCTAAACCTACGCCCAAGACAAGTGGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAAATGAAACAAACAGAAGTAGACTGTGAGTTCTTGAAGAAATGTTGCGAGACCTTGACAAACGAAAATAGAAGACTACAGAAGGAGCTTCAAGAATTGAAGGCACTAAAGCTCGCACACCCGCTGTACATGCACATGCCAGCAGCAACGTTAACCATGTGCCCATCCTGCGAAAGGGTGGGTGGCGTTGGCGTTGGCGTTGGCGATGGCGCTTCCAAACCCAAATTTTCAATGGCTCCCAAGCCCCACTTTTACAACCCCTTCTCCAATCCTTCAGCCGCATGTTAG | 828 | 45.53 | MGLDDVSQTSLVLGLGISEAASPILNNFKNNKKKKNNKENPTSLEFEPCALTLGFSGDVDPPPHHHPHHHHHLYRQASPHSSAVCSSFSGGGGGGIKRERDLSSEEVELERVCCRVSDEDEDGCNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTKMKQTEVDCEFLKKCCETLTNENRRLQKELQELKALKLAHPLYMHMPAATLTMCPSCERVGGVGVGVGDGASKPKFSMAPKPHFYNPFSNPSAAC | 275 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4505674 | 4507837 | - | Cp4.1LG01g09020.1 | Cpe01g00772 | 462085 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00772 | 275 | Pfam | Homeobox associated leucine zipper | 183 | 217 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe01g00772 | 275 | Pfam | Homeodomain | 127 | 181 | IPR001356 | GO:0003677 | |
Cpe01g00772 | 275 | SUPERFAMILY | Homeodomain-like | 121 | 184 | IPR009057 | - | |
Cpe01g00772 | 275 | MobiDBLite | consensus disorder prediction | 58 | 78 | - | - | |
Cpe01g00772 | 275 | ProSitePatterns | 'Homeobox' domain signature. | 158 | 181 | IPR017970 | GO:0000981|GO:0006355 | |
Cpe01g00772 | 275 | ProSiteProfiles | 'Homeobox' domain profile. | 123 | 183 | IPR001356 | GO:0003677 | |
Cpe01g00772 | 275 | SMART | halz | 183 | 226 | IPR003106 | GO:0006355|GO:0043565 | |
Cpe01g00772 | 275 | CDD | homeodomain | 127 | 181 | IPR001356 | GO:0003677 | |
Cpe01g00772 | 275 | PANTHER | - | 8 | 275 | - | - | |
Cpe01g00772 | 275 | Coils | Coil | 189 | 219 | - | - | |
Cpe01g00772 | 275 | Gene3D | - | 131 | 181 | - | - | |
Cpe01g00772 | 275 | SMART | HOX_1 | 125 | 187 | IPR001356 | GO:0003677 | |
Cpe01g00772 | 275 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE | 8 | 275 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00772 | Cpe-Chr1:4505674 | Cpe10g00508 | Cpe-Chr10:2995591 | 1.58E-102 | dispersed | |
Cpe01g00772 | Cpe-Chr1:4505674 | Cpe19g00701 | Cpe-Chr19:5513364 | 8.59E-107 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48790 | PF00046 | Homeodomain | 7.00E-16 | CL0123 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00772 | K09338 | - | csv:101205848 | 336.265 |