Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00780 ATGGACAAGAGAAACTTAATGGACATGAACATCAACAATTCTTCGGGGCAATTCAAAGTCAGACTACAAAGAAGTGGTGGAAATGTCGTGATGGATAATGGTATTGTCCAAGTTACTCTGTCCACCCCAGATGGTGACGTGGTTGGATTGAGCTACAATGGAATCGATAACATTCTGGACACCAAAACCGAAGCGCCGAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAAACGAACACATTAACACTGACAGATTACTAGGAACCACGTTTAAAGTGATAGTATCCACCGACGAGCAACTGGAAATCTCGTTTGTCAAAACATGGAGCGTTGCAGTTGGGAACAAGAACGCCCCTGTCAATGTAGACAAAAGGTTCGTGTTGCTGAGAGGAAGCTCTGGGTTTTATACGTATGCCGTATTCGAGAGGCTGACGGGGTGGCCGGAGATTGAAATGGATCAAGTTAGGATCGTTTTCAGACCTCAGAAAAAAATGTTTGATTACATGGCTGTATCGGACAGTAGGCAGAGAGTGATGCCGACAATGGACGACCGAAATAATGGTGATCCATTGGCATATCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATGAGAAACTCAGAGGAGAGGTAGATGACAAGTACATGTATTCAATAGAGGACAAGGACAACCTAGTTCACGGCTGGATCTCAAGAAATCCACCGACTGGATTCTGGATGATCACTCCAAGTGACGAGTTCCGCGTCGCCGGTCCGTTCAAGCAGGATCTCACCTCCCACGCTGGCCCCATCACTCTCTCCGTAAGTTCCCGTCTAACCCATTTCCATTTCCATCCATCACCGGTTTCTAACAATACCTTCACTCTAATGTCTACCACACAGATGTTCGTTAGCACCCACTACGCTGGAACGGATGTGGGCATGAAATTTGCAGAAGGAGAGCCTTGGAAGAAGGTCTTCGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCCCTAAGGAGGATTATCGTTCTCTATGGCAAGATGCCAAACAACAGTTGGCAACGGAAATCAGTAAGTGGCCCTATACTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGCGTCGCCGGCCGGTTACTAATCCGTGATGGGTCTATCAGCGACAGACTTTTGCGTGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAAGGGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGACAGTCACGGCAGCTTCTTAATCAATAACGTTCGAGAAGGAGTTTATAATCTTTATGCTTTTGTTCCTGGCTTTATTGGAGACTACAAGTACGAGGGAAATATCACAATCAAGGCTGGGTCTAAAATTAAATTGGATGAGATGGTGTTTGATCCGCCGAGACAGGGCCCAACCATCTGGGAGATCGGCATTCCCGACCGCACAGCAGCGGAGTTTTATGTGCCCGACCCTTTTCCGACTCTCATGAATAAACTATACATTGACCATGATGACAAGTTCAGACAATATGGGTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTATTTAGTGTTGGTGTGGATAATTATACCCAGGACTGGTTCTATGCTCACGTTACCAGGGATGTGGGGAATCAAACATACGAAGCAACCACATGGGAGGTCAGATTTTCATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTGGCATCTGCTGCTGATTGCGAATTACAGGTTCGGTTAAACGATAAAACGTCGAGCCAACCCGGGTTTACGACAGGAAGGATCGGAAGGGACAACGCAATTGCAAGGCATGGGATTCATGGGCTTTACTGGTTATACTCGGCGCCTTTCCCTGGCACTCAATTTCTGAAAGGGAACAACTCCATGTATTTCACTCAGGCAAGAAGCAAAGGCCCTTTCCAAGGTCTCATGTACGACTACGTTCGACTCGAAGCTCCACCTCGAACATAA 2022 46.79 MDKRNLMDMNINNSSGQFKVRLQRSGGNVVMDNGIVQVTLSTPDGDVVGLSYNGIDNILDTKTEAPNRGYWDAVWNNPNEHINTDRLLGTTFKVIVSTDEQLEISFVKTWSVAVGNKNAPVNVDKRFVLLRGSSGFYTYAVFERLTGWPEIEMDQVRIVFRPQKKMFDYMAVSDSRQRVMPTMDDRNNGDPLAYPEAVLLTNPANEKLRGEVDDKYMYSIEDKDNLVHGWISRNPPTGFWMITPSDEFRVAGPFKQDLTSHAGPITLSVSSRLTHFHFHPSPVSNNTFTLMSTTQMFVSTHYAGTDVGMKFAEGEPWKKVFGPVFVYLNSASPKEDYRSLWQDAKQQLATEISKWPYTFPQSEDFPSSAQRGSVAGRLLIRDGSISDRLLRASNAFVGLALPGPVGSWQRESKGYQFWTQADSHGSFLINNVREGVYNLYAFVPGFIGDYKYEGNITIKAGSKIKLDEMVFDPPRQGPTIWEIGIPDRTAAEFYVPDPFPTLMNKLYIDHDDKFRQYGLWERYAAMYPNNDLVFSVGVDNYTQDWFYAHVTRDVGNQTYEATTWEVRFSLQSVNQTANYTLQIALASAADCELQVRLNDKTSSQPGFTTGRIGRDNAIARHGIHGLYWLYSAPFPGTQFLKGNNSMYFTQARSKGPFQGLMYDYVRLEAPPRT 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4566550 4570362 + Cp4.1LG01g08970.1 Cpe01g00780 462093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00780 673 Gene3D - 20 295 IPR014718 GO:0030246
Cpe01g00780 673 SUPERFAMILY Starch-binding domain-like 369 467 IPR013784 GO:0030246
Cpe01g00780 673 CDD RGL4_N 20 334 - -
Cpe01g00780 673 CDD RGL4_M 370 466 IPR029413 -
Cpe01g00780 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 294 672 - -
Cpe01g00780 673 Pfam Rhamnogalacturonate lyase family 10 212 IPR010325 -
Cpe01g00780 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 26 271 - -
Cpe01g00780 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 294 672 - -
Cpe01g00780 673 Gene3D - 477 668 - -
Cpe01g00780 673 CDD RGL4_C 481 668 - -
Cpe01g00780 673 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 26 271 - -
Cpe01g00780 673 SUPERFAMILY Galactose-binding domain-like 477 668 IPR008979 -
Cpe01g00780 673 Pfam Polysaccharide lyase family 4, domain III 479 667 IPR029411 -
Cpe01g00780 673 Gene3D - 367 467 - -
Cpe01g00780 673 SUPERFAMILY Galactose mutarotase-like 24 263 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cpe01g00780 673 Pfam Polysaccharide lyase family 4, domain II 393 465 IPR029413 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00780 Cpe-Chr1:4566550 Cpe02g00484 Cpe-Chr2:2771306 0 dispersed
Cpe01g00780 Cpe-Chr1:4566550 Cpe10g00529 Cpe-Chr10:3101888 2.33E-75 wgd
Cpe01g00780 Cpe-Chr1:4566550 Cpe19g00728 Cpe-Chr19:5660815 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00780 K18195 - csv:101215252 1083.55