Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00782 ATGGCTGGGGGAGGAATGATCCGGCACCTACTCAGGAAATTTCCATCTCAATCTTCAACCCCTCCTTTGACCTCTTCCCTTATTTCAAAAAACGAGGAAGCTGGCTTTGCTGGGATGAACTCCTTTAGAAGGCTTGCGCTACTTGGAGCAGGCATTTCTGGATTTTTCAGTTTTGCAACTTTGGCATCTGCTGATGAGGCAGAACATGGCTTGGAGTGTCCAAACTATCCCTGGCCTCACCAGGGCATTTTGAGTTCATATGATCATGCTTCGATTAGGCGTGGTCATCAGGTTTATCAACAAGTGTGTGCATCTTGTCATTCCATGTCTTTGATATCATATCGTGATTTGGTTGGTGTTGCATATACTGAAGAGGAGACGAAAGCAATGGCTGCTGAAATTGAGGTAGTGGATGGGCCTAATGATGAGGGTGAGATGTTCACTCGTCCAGGTAAACTCAGTGATCGGTTTCCTGAACCATATGCCAATGAACAAGCTGCTAGATTTGCTAATGGTGGAGCTTACCCTCCGGATCTAAGCCTCATCACAAAGGCTCGTCATAATGGTCAGAATTATGTATTTTCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGATCCGAGAGGGTCTGCACTATAACCCTTATTTCCCTGGTGGAGCAATTGCAATGCCTAAGATGCTTAATGATGGAGCTGTTGAATACGAAGATGGTACCCCTGCAACAGAAGCACAGATGGGGAAAGATGTTGTGTCATTCTTGTCATGGGCAGCTGAACCAGAAATGGAAGAAAGGAAACTGATGGGATTCAAATGGATCTTCGTGCTCTCTTTGGCTCTACTTCAGGCCGCATACTACCGCCGATTGAAGTGGTCAGTTTTGAAGTCCCGCAAGCTGGTTCTTGATGTAGTCAACTAG 924 46.21 MAGGGMIRHLLRKFPSQSSTPPLTSSLISKNEEAGFAGMNSFRRLALLGAGISGFFSFATLASADEAEHGLECPNYPWPHQGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4578705 4584031 - Cp4.1LG01g08870.1 Cpe01g00782 462095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00782 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055|GO:0020037
Cpe01g00782 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 Gene3D - 263 306 - -
Cpe01g00782 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055|GO:0020037
Cpe01g00782 307 PANTHER CYTOCHROME C1 25 307 IPR002326 GO:0009055|GO:0020037
Cpe01g00782 307 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 25 307 - -
Cpe01g00782 307 Gene3D - 67 262 IPR036909 GO:0009055|GO:0020037
Cpe01g00782 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00740 Cpe-Chr1:4301367 Cpe01g00782 Cpe-Chr1:4578705 6.53E-11 transposed
Cpe01g00782 Cpe-Chr1:4578705 Cpe14g00637 Cpe-Chr14:4095438 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00782 K00413 - csv:101215010 602.438