Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00784 | ATGAAACATGTCACTAAGCAAGAGTTTATTGCATCTTTGCGAAGAAAAAGCAGTGGTTTTTCGAGGGGTGCGTCTATTTACAGAGGTGTGACGAGGCATCATCAGCAAGGTCGATGGCAGGCGAGGATTGGGCGTGTTGCAGGGAATAAGGATTTGTATCTCGGGACATTTGCTACTGAGGAGGAAGCTGCTGAGGCTTATGATATAGCAGCGATCAAGTTTAGGGGTTTGAATGCCGTGACGAACTTCGAGATGAATCGATACGATGTGGAGGCTATTGCGAAGAGTGCATTGCCAATTGGGGGAGCTGCAAAAAGGCTGAAGCTTTGCCTTGAATCGGATCAGAAGCAGATATCAAATCATGATCAAGCAGCCCAATGCAGCAGTGGAAGCAACAGCATCAACTTCGGCGCCCCTATTCAGTCTATGCCACCCATCCCCTGTGGAATTCCATATGATACTGCAGCCATGCTGTATCACCATAACTACTTCCATCATCTCCAACCAAACCCTCTCGGCTCGTCGGAGTCGACCACCCCAGCCATTGGAGCATCTACCATGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTATTAG | 606 | 48.84 | MKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIAKSALPIGGAAKRLKLCLESDQKQISNHDQAAQCSSGSNSINFGAPIQSMPPIPCGIPYDTAAMLYHHNYFHHLQPNPLGSSESTTPAIGASTMAPQAAEFFVWPHQY | 201 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4588880 | 4590573 | - | Cp4.1LG01g08900.1 | Cpe01g00784 | 462097 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00784 | 201 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 | 1 | 179 | - | - | |
Cpe01g00784 | 201 | SUPERFAMILY | DNA-binding domain | 25 | 85 | IPR016177 | GO:0003677 | |
Cpe01g00784 | 201 | Pfam | AP2 domain | 26 | 76 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g00784 | 201 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 179 | - | - | |
Cpe01g00784 | 201 | PRINTS | Ethylene responsive element binding protein signature | 27 | 38 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g00784 | 201 | PRINTS | Ethylene responsive element binding protein signature | 66 | 86 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g00784 | 201 | ProSiteProfiles | AP2/ERF domain profile. | 26 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g00784 | 201 | Gene3D | AP2/ERF domain | 26 | 86 | IPR036955 | GO:0003700|GO:0006355 | |
Cpe01g00784 | 201 | CDD | AP2 | 25 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cpe01g00784 | 201 | SMART | rav1_2 | 26 | 90 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00784 | Cpe-Chr1:4588880 | Cpe14g00643 | Cpe-Chr14:4162762 | 2.67E-106 | dispersed | |
Cpe01g00784 | Cpe-Chr1:4588880 | Cpe02g01743 | Cpe-Chr2:14248478 | 1.11E-07 | transposed | |
Cpe01g00784 | Cpe-Chr1:4588880 | Cpe11g00106 | Cpe-Chr11:586597 | 1.34E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48792 | PF00847 | AP2 | 4.60E-11 | CL0081 | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00784 | K09285 | - | csv:101217714 | 355.525 |