Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00784 ATGAAACATGTCACTAAGCAAGAGTTTATTGCATCTTTGCGAAGAAAAAGCAGTGGTTTTTCGAGGGGTGCGTCTATTTACAGAGGTGTGACGAGGCATCATCAGCAAGGTCGATGGCAGGCGAGGATTGGGCGTGTTGCAGGGAATAAGGATTTGTATCTCGGGACATTTGCTACTGAGGAGGAAGCTGCTGAGGCTTATGATATAGCAGCGATCAAGTTTAGGGGTTTGAATGCCGTGACGAACTTCGAGATGAATCGATACGATGTGGAGGCTATTGCGAAGAGTGCATTGCCAATTGGGGGAGCTGCAAAAAGGCTGAAGCTTTGCCTTGAATCGGATCAGAAGCAGATATCAAATCATGATCAAGCAGCCCAATGCAGCAGTGGAAGCAACAGCATCAACTTCGGCGCCCCTATTCAGTCTATGCCACCCATCCCCTGTGGAATTCCATATGATACTGCAGCCATGCTGTATCACCATAACTACTTCCATCATCTCCAACCAAACCCTCTCGGCTCGTCGGAGTCGACCACCCCAGCCATTGGAGCATCTACCATGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTATTAG 606 48.84 MKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIAKSALPIGGAAKRLKLCLESDQKQISNHDQAAQCSSGSNSINFGAPIQSMPPIPCGIPYDTAAMLYHHNYFHHLQPNPLGSSESTTPAIGASTMAPQAAEFFVWPHQY 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4588880 4590573 - Cp4.1LG01g08900.1 Cpe01g00784 462097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00784 201 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 1 179 - -
Cpe01g00784 201 SUPERFAMILY DNA-binding domain 25 85 IPR016177 GO:0003677
Cpe01g00784 201 Pfam AP2 domain 26 76 IPR001471 GO:0003700|GO:0006355
Cpe01g00784 201 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 179 - -
Cpe01g00784 201 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Cpe01g00784 201 PRINTS Ethylene responsive element binding protein signature 66 86 IPR001471 GO:0003700|GO:0006355
Cpe01g00784 201 ProSiteProfiles AP2/ERF domain profile. 26 84 IPR001471 GO:0003700|GO:0006355
Cpe01g00784 201 Gene3D AP2/ERF domain 26 86 IPR036955 GO:0003700|GO:0006355
Cpe01g00784 201 CDD AP2 25 84 IPR001471 GO:0003700|GO:0006355
Cpe01g00784 201 SMART rav1_2 26 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00784 Cpe-Chr1:4588880 Cpe14g00643 Cpe-Chr14:4162762 2.67E-106 dispersed
Cpe01g00784 Cpe-Chr1:4588880 Cpe02g01743 Cpe-Chr2:14248478 1.11E-07 transposed
Cpe01g00784 Cpe-Chr1:4588880 Cpe11g00106 Cpe-Chr11:586597 1.34E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48792 PF00847 AP2 4.60E-11 CL0081 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00784 K09285 - csv:101217714 355.525