Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00797 ATGCTTATAGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCCCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCGAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTAAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAATCGGGTGGGAAGATGTCTAGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGACGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGATGAATTCTGGATTTGTTGTGATGTATGTGAAAGATGGTTCCATGGAAAGTGTGTGAAGATTACACCTGCCAAGGCCGAGCATATCAAACAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 648 45.83 MLIEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSGGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 215
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4705255 4709774 + Cp4.1LG01g08840.1 Cpe01g00797 462110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00797 215 Pfam Alfin 4 98 IPR021998 GO:0006355|GO:0042393
Cpe01g00797 215 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 4 215 - -
Cpe01g00797 215 MobiDBLite consensus disorder prediction 99 161 - -
Cpe01g00797 215 MobiDBLite consensus disorder prediction 99 122 - -
Cpe01g00797 215 CDD PHD_AL_plant 162 211 IPR044104 -
Cpe01g00797 215 SMART PHD_3 161 209 IPR001965 -
Cpe01g00797 215 MobiDBLite consensus disorder prediction 123 142 - -
Cpe01g00797 215 SUPERFAMILY FYVE/PHD zinc finger 150 212 IPR011011 -
Cpe01g00797 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 210 IPR013083 -
Cpe01g00797 215 MobiDBLite consensus disorder prediction 143 160 - -
Cpe01g00797 215 ProSiteProfiles Zinc finger PHD-type profile. 159 211 IPR019787 -
Cpe01g00797 215 ProSitePatterns Zinc finger PHD-type signature. 162 208 IPR019786 -
Cpe01g00797 215 PANTHER CPG BINDING PROTEIN 4 215 IPR045104 GO:0006355|GO:0042393
Cpe01g00797 215 Pfam PHD-finger 162 211 IPR019787 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00797 Cpe14g00651 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00797 Cpe-Chr1:4705255 Cpe17g00469 Cpe-Chr17:3498302 5.87E-95 dispersed
Cpe01g00797 Cpe-Chr1:4705255 Cpe14g00651 Cpe-Chr14:4225669 5.46E-117 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48794 PF12165 Alfin 1.00E-49 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00797 - - cpep:111798014 396.356