Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe01g00797 | ATGCTTATAGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCCCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCGAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTAAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAATCGGGTGGGAAGATGTCTAGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGACGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAACGATGAATTCTGGATTTGTTGTGATGTATGTGAAAGATGGTTCCATGGAAAGTGTGTGAAGATTACACCTGCCAAGGCCGAGCATATCAAACAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA | 648 | 45.83 | MLIEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSGGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV | 215 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 4705255 | 4709774 | + | Cp4.1LG01g08840.1 | Cpe01g00797 | 462110 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe01g00797 | 215 | Pfam | Alfin | 4 | 98 | IPR021998 | GO:0006355|GO:0042393 | |
Cpe01g00797 | 215 | PANTHER | ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED | 4 | 215 | - | - | |
Cpe01g00797 | 215 | MobiDBLite | consensus disorder prediction | 99 | 161 | - | - | |
Cpe01g00797 | 215 | MobiDBLite | consensus disorder prediction | 99 | 122 | - | - | |
Cpe01g00797 | 215 | CDD | PHD_AL_plant | 162 | 211 | IPR044104 | - | |
Cpe01g00797 | 215 | SMART | PHD_3 | 161 | 209 | IPR001965 | - | |
Cpe01g00797 | 215 | MobiDBLite | consensus disorder prediction | 123 | 142 | - | - | |
Cpe01g00797 | 215 | SUPERFAMILY | FYVE/PHD zinc finger | 150 | 212 | IPR011011 | - | |
Cpe01g00797 | 215 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 210 | IPR013083 | - | |
Cpe01g00797 | 215 | MobiDBLite | consensus disorder prediction | 143 | 160 | - | - | |
Cpe01g00797 | 215 | ProSiteProfiles | Zinc finger PHD-type profile. | 159 | 211 | IPR019787 | - | |
Cpe01g00797 | 215 | ProSitePatterns | Zinc finger PHD-type signature. | 162 | 208 | IPR019786 | - | |
Cpe01g00797 | 215 | PANTHER | CPG BINDING PROTEIN | 4 | 215 | IPR045104 | GO:0006355|GO:0042393 | |
Cpe01g00797 | 215 | Pfam | PHD-finger | 162 | 211 | IPR019787 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe01g00797 | Cpe14g00651 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe01g00797 | Cpe-Chr1:4705255 | Cpe17g00469 | Cpe-Chr17:3498302 | 5.87E-95 | dispersed | |
Cpe01g00797 | Cpe-Chr1:4705255 | Cpe14g00651 | Cpe-Chr14:4225669 | 5.46E-117 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48794 | PF12165 | Alfin | 1.00E-49 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe01g00797 | - | - | cpep:111798014 | 396.356 |