Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00826 ATGGTTTATGGGAATGGTGGGTTTGTTTGGGTTTTGTATGCGTTGTTTTTCATGGTGGTCGGTGGGTCCTTCGTCCATGGGGACGGTGGTGCTTGGCTTCATGCTCATGCAACTTTCTATGGAGCTGATCAAAACCCTACTAGCCTTGGAGGAGCATGTGGTTACGACAATACATTTCATGCCGGATTTGGAATAAACACGGCGGCGGTGAGCGGCGCACTTTTCAGAGGAGGAGAGGCTTGCGGCGCTTGCTTCCTAGTAATTTGCAACTACAACGTGGACCCCAAGTGGTGTCTCCGCCGCCGCGCCGTCGCCATCACCGCCACAAACTTCTGCCCCTCCAATAACAACGGGGGCTGGTGCGACCCACCTCGCGCGCACTTCGACATGTCGTCACCTGCCTTTCTTACCATTGCTCGGCAAGGCAACGAAGGGATCGTCCCTGTCCTTTACAAGAGGGTAAGTTGTAGAAGGAAGGGAGGAGTTCGATTCACTTTGAGAGGACAATCAAACTTCAATATGGTGATGATATCGAACGTCGGTGGCAGTGGCGACGTGAAGGCTGCATGGGTTAAAGGGTCAAGGACGAGGACGTGGATGCCCATGCATCGTAATTGGGGGGCAAACTGGCAAGCCAATGTCGACCTTCGAAACCAAAGAATGTCGTTTAAGGTTACTCTAATAGATGGGAGGACATTGGAGTTTGTCAATGTGGTTCCTTCCTCTTGGAGGTTTGGACAGACGTTTTCTTCCATGATTCAGTTTTCT 768 51.43 MVYGNGGFVWVLYALFFMVVGGSFVHGDGGAWLHAHATFYGADQNPTSLGGACGYDNTFHAGFGINTAAVSGALFRGGEACGACFLVICNYNVDPKWCLRRRAVAITATNFCPSNNNGGWCDPPRAHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVKGSRTRTWMPMHRNWGANWQANVDLRNQRMSFKVTLIDGRTLEFVNVVPSSWRFGQTFSSMIQFS 256
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 4910298 4911472 + Cp4.1LG01g08550.1 Cpe01g00826 462139
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00826 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
Cpe01g00826 256 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Cpe01g00826 256 Gene3D - 21 157 IPR036908 -
Cpe01g00826 256 SUPERFAMILY Barwin-like endoglucanases 11 179 IPR036908 -
Cpe01g00826 256 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Cpe01g00826 256 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Cpe01g00826 256 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Cpe01g00826 256 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Cpe01g00826 256 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Cpe01g00826 256 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Cpe01g00826 256 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Cpe01g00826 256 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Cpe01g00826 256 PANTHER EXPANSIN-A15 12 256 IPR002963 GO:0009664
Cpe01g00826 256 SUPERFAMILY PHL pollen allergen 158 251 IPR036749 -
Cpe01g00826 256 SMART dpbb_1 67 151 IPR007112 -
Cpe01g00826 256 Pfam Lytic transglycolase 67 151 IPR009009 -
Cpe01g00826 256 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Cpe01g00826 256 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Cpe01g00826 256 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Cpe01g00826 256 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Cpe01g00826 256 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Cpe01g00826 256 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Cpe01g00826 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 161 IPR007112 -
Cpe01g00826 256 PANTHER EXPANSIN-A12 12 256 - -
Cpe01g00826 256 Gene3D - 161 256 IPR036749 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00826 Cpe-Chr1:4910298 Cpe02g01346 Cpe-Chr2:11913145 1.33E-80 dispersed
Cpe01g00826 Cpe-Chr1:4910298 Cpe05g00925 Cpe-Chr5:6080077 1.03E-82 transposed
Cpe01g00826 Cpe-Chr1:4910298 Cpe13g01039 Cpe-Chr13:8521044 5.53E-83 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00826 - - bhj:120091876 485.723