Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00836 ATGAAAGAGGAGTCAACTGGATTGATCATTGGAATTTCGATTGGAGTGGTGATTGGAGTTCTTTTGGCGATTCTTGCTCTATTCTGCTTTAGATACCATAGGAAGCGGTTGCAGATTGGTAATAGCAGTTCAAGGAGGGCAGCTAATGTTCCTATTCGAACAAACGGAGCTGATGCTTGTAGTATTCTATCAGACTCAACAGTGGCTCCAGAATCACCCGTGAAGTCCAGCCAGAATGGTATATCCTCATGGCTTGACGGATTTAAGAAAAGCTGCGTGATCTCATCTGGGATGCCTGAATATTCTTTCAAAGATCTCCAAAAAGCAACCGGAAATTTTACAAGTGTAATAGGACAAGGAGCATTTGGTCCTGTTTATAAAGCTACCTTGCCGTCTGGAGAGACTGTTGCTGTGAAAGTGCTTGCAACCAATTCTAAACAAGGAGAGAAAGAATTTCAGACAGAGGTGATGTTATTGGGAAGATTGCATCATAGAAACCTCGTGAATTTGATCGGATACTGTGCTGAAAGAGGCGAGCATATGCTTGTGTATGTCTACATGAGTAAAGGCAGCCTAGCTTCTCACTTATATAGTGATAAGAATGGACTACTAAGTTGGAATGTAAGAGTTCGGATAGCTTTAGATGTAGCAAGGGGTTTGGAGTATCTTCATGATGGGGTTGCTGATTTTGGGCTTTCAAGAGAAGAGGTGGTTGACAGTCATGCAGCTAACATTAGAGGAACTTTAGGTTACCTTGATCCTGAGTACATATCTTCCAAGACATTCAACAAGAAAAGCGATGTTTACAGCTTCGGAGTATTACTTTTCGAGATTATTGCTGGCAGAAATCCTCAACAGGGCCTCATGGAATATGTTGAGCTTGCTGCCATGAATTCTGATGGGAAAGTTGGGTGGGAAGAGCTTGTTGATTCCCGTCTGGATGGAAACTTCGACGCTCAAGAGCTGAATGAAGTAGCAGCTCTGGCATACAAATCCATTAACCGTGTTCCGAAAAAACGACCTTCGATGAGAGACAACGTACAAGTTCTGTCCCGAATTCTAAAACAAAGACAGAACAATAGATTTAACCAAAATATGGTGTCAACGACAAGAGATGAAATTGGCATTGATGTGGATCAAGTAGAAAGCAGGAGTCCCAGGAGTCCAATGCCTGAACACCAACGACAACAGTCCACGGATAGTACAGCCGAATCATTTGATGTTTAG 1227 42.46 MKEESTGLIIGISIGVVIGVLLAILALFCFRYHRKRLQIGNSSSRRAANVPIRTNGADACSILSDSTVAPESPVKSSQNGISSWLDGFKKSCVISSGMPEYSFKDLQKATGNFTSVIGQGAFGPVYKATLPSGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLIGYCAERGEHMLVYVYMSKGSLASHLYSDKNGLLSWNVRVRIALDVARGLEYLHDGVADFGLSREEVVDSHAANIRGTLGYLDPEYISSKTFNKKSDVYSFGVLLFEIIAGRNPQQGLMEYVELAAMNSDGKVGWEELVDSRLDGNFDAQELNEVAALAYKSINRVPKKRPSMRDNVQVLSRILKQRQNNRFNQNMVSTTRDEIGIDVDQVESRSPRSPMPEHQRQQSTDSTAESFDV 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4957749 4960592 - Cp4.1LG01g08380.1 Cpe01g00836 462149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00836 408 PANTHER OS01G0750732 PROTEIN 4 226 - -
Cpe01g00836 408 SUPERFAMILY Protein kinase-like (PK-like) 99 367 IPR011009 -
Cpe01g00836 408 PANTHER OS01G0750732 PROTEIN 227 404 - -
Cpe01g00836 408 Gene3D Phosphorylase Kinase; domain 1 78 186 - -
Cpe01g00836 408 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 227 404 - -
Cpe01g00836 408 Gene3D Transferase(Phosphotransferase) domain 1 187 376 - -
Cpe01g00836 408 MobiDBLite consensus disorder prediction 390 408 - -
Cpe01g00836 408 MobiDBLite consensus disorder prediction 372 408 - -
Cpe01g00836 408 ProSiteProfiles Protein kinase domain profile. 111 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00836 408 Pfam Protein kinase domain 227 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe01g00836 408 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 4 226 - -
Cpe01g00836 408 Pfam Protein tyrosine and serine/threonine kinase 113 225 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00836 - - - csv:101209720 670.233
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cpe01g00836 Cpe02g00744 CCT
Cpe01g00836 Cpe06g00738 CCT
Cpe01g00836 Cpe14g00713 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00836 Cpe-Chr1:4957749 Cpe02g00744 Cpe-Chr2:4735010 0 dispersed
Cpe14g00292 Cpe-Chr14:1714613 Cpe01g00836 Cpe-Chr1:4957749 2.68E-51 dispersed
Cpe01g00836 Cpe-Chr1:4957749 Cpe01g00839 Cpe-Chr1:4970235 0 proximal
Cpe01g00836 Cpe-Chr1:4957749 Cpe14g00713 Cpe-Chr14:4720960 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g406 Blo03g00588 . Bda07g00333 . . . . . . . Cma01g01158 Cma09g00918 . Car09g00834 . Cpe06g00738 Cpe02g00744 Bhi09g01956 . . . . Mch11g1145 . . . . . . . . . Cone9ag0109 . . Lsi04g01252 . Chy04g01023 . . . . . Bpe11g00519 . . Bma14g00362 . Cmo01g01212 Cmo09g00912 Cma04g01014 . Car04g00865 Car16g00570 Cpe14g00713 Cpe01g00836 . . . . . . . Cla05g01548 . . . . . . . . . Cme04g00791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001530 1 4 1 1 1 1 4 1 2 2 2 1 4 2 1 4 0 0 5 2 2 1 0 0 1 2 0 0 0 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62130 PF00069 Pkinase 4.70E-13 CL0016 Cpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cpe01g00836 Cpe_Chr01 FPKM 12.194642 12.596364 10.924835 11.50158 43.557693 40.752193 43.042591 12.540462 12.77529 13.577321